Difference between revisions of "RXN0-2601"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14227 RXN-14227] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-dna_gly...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14227 RXN-14227] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_deoxy_cytosolic_type_c_protein
+
** formamidopyrimidine-dna_glycosylase
−
** 5_-nucleotidase
+
** dna_glycosylase
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
** dna-(apurinic_or_apyrimidinic_site)_lyase
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[CPD-8259]][c]
+
** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 β-nicotinate D-ribonucleotide[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 β-D-ribosylnicotinate[c]
+
** 1 a damaged DNA pyrimidine[c] '''=>''' 1 an apyrimidinic site in DNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14246]]
+
* Gene: [[Tiso_gene_16493]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_14435]]
+
* Gene: [[Tiso_gene_19077]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_6640]]
+
* Gene: [[Tiso_gene_17380]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_5911]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_13929]]
+
* Gene: [[Tiso_gene_14609]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_16492]]
−
* [[Tiso_gene_6988]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_1280]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_14434]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_19078]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_11590]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30938 30938]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03346 R03346]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=dna_glycosylase}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: gene associated=Tiso_gene_16493|Tiso_gene_19077|Tiso_gene_17380|Tiso_gene_14609|Tiso_gene_16492|Tiso_gene_1280|Tiso_gene_19078|Tiso_gene_11590|Tiso_gene_6558}}
−
{{#set: gene associated=Tiso_gene_14246|Tiso_gene_14435|Tiso_gene_6640|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_6988|Tiso_gene_14434}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:23, 21 March 2018

Reaction RXN0-2601

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • dna_glycosylase
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-2601&oldid=41336"