Difference between revisions of "PWY0-862"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.1-RXN 3.1.13.1-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exosome_complex_exonu...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.1-RXN 3.1.13.1-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** exosome_complex_exonuclease
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** (5Z)-dodec-5-enoate biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.13.1 EC-3.1.13.1]
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* Synonym(s):
 
* Synonym(s):
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** Ribonuclease II
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** (5Z)-dodecenoate biosynthesis
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** cis-dodecenoate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** n [[WATER]][c] '''+''' 1 [[RNASE-II-DEGRADATION-SUBSTRATE-MRNA]][c] '''=>''' n [[Nucleoside-Monophosphates]][c]
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* [[RXN-9655]]
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* With common name(s):
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** 6 associated gene(s):
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** n H2O[c] '''+''' 1 RNase II degradation substrate mRNA[c] '''=>''' n a nucleoside 5'-monophosphate[c]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_136]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_500]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13394]]
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* [[Tiso_gene_11613]]
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*** [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_6884]]
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***EC-NUMBER
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_11612]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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* [[RXN0-2141]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
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** 2 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN0-2142]]
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** 2 associated gene(s):
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*** [[Tiso_gene_13083]]
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*** [[Tiso_gene_9885]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-2144]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6884]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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* [[RXN0-2145]]
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** 1 associated gene(s):
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*** [[Tiso_gene_10778]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=5.3.3.14-RXN 5.3.3.14-RXN]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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* ECOCYC:
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** [http://www.uniprot.org/uniprot/P30850 P30850]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-862 PWY0-862]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=exosome_complex_exonuclease}}
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{{#set: common name=(5Z)-dodec-5-enoate biosynthesis}}
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{{#set: ec number=EC-3.1.13.1}}
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{{#set: common name=(5Z)-dodecenoate biosynthesis|cis-dodecenoate biosynthesis}}
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{{#set: common name=Ribonuclease II}}
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{{#set: reaction found=5}}
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{{#set: gene associated=Tiso_gene_11613|Tiso_gene_11612}}
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{{#set: total reaction=6}}
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{{#set: in pathway=}}
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{{#set: completion rate=83.0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:19, 21 March 2018

Pathway PWY0-862

  • taxonomic range:
  • common name:
    • (5Z)-dodec-5-enoate biosynthesis
  • Synonym(s):
    • (5Z)-dodecenoate biosynthesis
    • cis-dodecenoate biosynthesis

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY0-862&oldid=40879"