Difference between revisions of "PWY-6969"

Latest revision as of 19:32, 21 March 2018

Pathway PWY-6969

taxonomic range:
- TAX-1117
- TAX-3035
- TAX-1224
- TAX-201174
common name:
- TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
Synonym(s):
- citric acid cycle
- tricarboxylic acid cycle
- Szent-Gyorgyi-Krebs cycle
- Krebs cycle

Reaction(s) found

9 reactions found over 12 reactions in the full pathway

ACONITATEDEHYDR-RXN
- 1 associated gene(s):
  - Tiso_gene_13007
- 3 reconstruction source(s) associated:
ACONITATEHYDR-RXN
- 1 associated gene(s):
  - Tiso_gene_13007
- 2 reconstruction source(s) associated:
  - annotation-in-silico_annotation
  - annotation-experimental_annotation
CITSYN-RXN
- 4 associated gene(s):
- 3 reconstruction source(s) associated:
FUMHYDR-RXN
- 2 associated gene(s):
  - Tiso_gene_3691
  - Tiso_gene_6720
- 6 reconstruction source(s) associated:
ISOCIT-CLEAV-RXN
- 1 associated gene(s):
  - Tiso_gene_14008
- 3 reconstruction source(s) associated:
ISOCITDEH-RXN
- 2 associated gene(s):
  - Tiso_gene_18262
  - Tiso_gene_10809
- 4 reconstruction source(s) associated:
MALATE-DEH-RXN
- 2 associated gene(s):
  - Tiso_gene_2323
  - Tiso_gene_1990
- 7 reconstruction source(s) associated:
MALSYN-RXN
- 1 associated gene(s):
  - Tiso_gene_14377
- 3 reconstruction source(s) associated:
SUCCCOASYN-RXN
- 2 associated gene(s):
  - Tiso_gene_15846
  - Tiso_gene_11866
- 7 reconstruction source(s) associated:

Reaction(s) not found

External links

@@ Line 1: / Line 1: @@
-[[Category:Reaction]]
+[[Category:Pathway]]
-== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] ==
+== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] ==
-* direction:
+* taxonomic range:
-** REVERSIBLE
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
+** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 * common name:
-** bifunctional_enolase2transcriptionalactivator
+** TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
-** bifunctional_enolase_2_transcriptional_activator
-** enolase_1
-* ec number:
-** [http://enzyme.expasy.org/EC/4.2.1.11 EC-4.2.1.11]
 * Synonym(s):
+** citric acid cycle
+** tricarboxylic acid cycle
+** Szent-Gyorgyi-Krebs cycle
+** Krebs cycle
-== Reaction Formula ==
+== Reaction(s) found ==
-* With identifiers:
+ '''9''' reactions found over '''12''' reactions in the full pathway
-** 1 [[2-PG]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
+* [[ACONITATEDEHYDR-RXN]]
-* With common name(s):
+** 1 associated gene(s):
-** 1 2-phospho-D-glycerate[c] '''<=>''' 1 H2O[c] '''+''' 1 phosphoenolpyruvate[c]
+*** [[Tiso_gene_13007]]
+** 3 reconstruction source(s) associated:
-== Genes associated with this reaction  ==
+*** [[annotation-experimental_annotation]]
-Genes have been associated with this reaction based on different elements listed below.
+*** [[annotation-in-silico_annotation]]
-* [[Tiso_gene_14718]]
+*** [[orthology-synechocystis]]
-** IN-SILICO_ANNOTATION
+* [[ACONITATEHYDR-RXN]]
-***EC-NUMBER
+** 1 associated gene(s):
-** EXPERIMENTAL_ANNOTATION
+*** [[Tiso_gene_13007]]
-***EC-NUMBER
+** 2 reconstruction source(s) associated:
-** [[pantograph]]-[[athaliana]]
+*** [[annotation-in-silico_annotation]]
-** [[pantograph]]-[[athaliana]]
+*** [[annotation-experimental_annotation]]
-** [[pantograph]]-[[synechocystis]]
+* [[CITSYN-RXN]]
-** [[pantograph]]-[[esiliculosus]]
+** 4 associated gene(s):
-** [[pantograph]]-[[creinhardtii]]
+*** [[Tiso_gene_18030]]
-** [[pantograph]]-[[creinhardtii]]
+*** [[Tiso_gene_9601]]
-** [[pantograph]]-[[creinhardtii]]
+*** [[Tiso_gene_9603]]
-* [[Tiso_gene_8720]]
+*** [[Tiso_gene_9602]]
-** IN-SILICO_ANNOTATION
+** 3 reconstruction source(s) associated:
-***EC-NUMBER
+*** [[annotation-experimental_annotation]]
-** EXPERIMENTAL_ANNOTATION
+*** [[manual-primary_network]]
-***EC-NUMBER
+*** [[annotation-in-silico_annotation]]
-** [[pantograph]]-[[athaliana]]
+* [[FUMHYDR-RXN]]
-** [[pantograph]]-[[athaliana]]
+** 2 associated gene(s):
-** [[pantograph]]-[[synechocystis]]
+*** [[Tiso_gene_3691]]
-** [[pantograph]]-[[esiliculosus]]
+*** [[Tiso_gene_6720]]
-** [[pantograph]]-[[creinhardtii]]
+** 6 reconstruction source(s) associated:
-** [[pantograph]]-[[creinhardtii]]
+*** [[annotation-experimental_annotation]]
-** [[pantograph]]-[[creinhardtii]]
+*** [[orthology-esiliculosus]]
-* [[Tiso_gene_5619]]
+*** [[annotation-in-silico_annotation]]
-** IN-SILICO_ANNOTATION
+*** [[orthology-athaliana]]
-***EC-NUMBER
+*** [[manual-primary_network]]
-** EXPERIMENTAL_ANNOTATION
+*** [[orthology-creinhardtii]]
-***EC-NUMBER
+* [[ISOCIT-CLEAV-RXN]]
-** [[pantograph]]-[[synechocystis]]
+** 1 associated gene(s):
-** [[pantograph]]-[[esiliculosus]]
+*** [[Tiso_gene_14008]]
-* [[Tiso_gene_13317]]
+** 3 reconstruction source(s) associated:
-** IN-SILICO_ANNOTATION
+*** [[annotation-in-silico_annotation]]
-***EC-NUMBER
+*** [[annotation-experimental_annotation]]
-** [[pantograph]]-[[synechocystis]]
+*** [[orthology-esiliculosus]]
-== Pathways  ==
+* [[ISOCITDEH-RXN]]
-* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+** 2 associated gene(s):
-** '''9''' reactions found over '''10''' reactions in the full pathway
+*** [[Tiso_gene_18262]]
-* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
+*** [[Tiso_gene_10809]]
-** '''6''' reactions found over '''9''' reactions in the full pathway
+** 4 reconstruction source(s) associated:
-* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
+*** [[annotation-experimental_annotation]]
-** '''8''' reactions found over '''10''' reactions in the full pathway
+*** [[manual-primary_network]]
-* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
+*** [[annotation-in-silico_annotation]]
-** '''5''' reactions found over '''13''' reactions in the full pathway
+*** [[orthology-esiliculosus]]
-* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+* [[MALATE-DEH-RXN]]
-** '''13''' reactions found over '''13''' reactions in the full pathway
+** 2 associated gene(s):
-* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+*** [[Tiso_gene_2323]]
-** '''12''' reactions found over '''12''' reactions in the full pathway
+*** [[Tiso_gene_1990]]
-* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+** 7 reconstruction source(s) associated:
-** '''8''' reactions found over '''12''' reactions in the full pathway
+*** [[annotation-experimental_annotation]]
-* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+*** [[orthology-esiliculosus]]
-** '''10''' reactions found over '''10''' reactions in the full pathway
+*** [[annotation-in-silico_annotation]]
-* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
+*** [[orthology-athaliana]]
-** '''7''' reactions found over '''10''' reactions in the full pathway
+*** [[orthology-synechocystis]]
-* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
+*** [[manual-primary_network]]
-** '''4''' reactions found over '''9''' reactions in the full pathway
+*** [[orthology-creinhardtii]]
-* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+* [[MALSYN-RXN]]
-** '''11''' reactions found over '''15''' reactions in the full pathway
+** 1 associated gene(s):
-* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+*** [[Tiso_gene_14377]]
-** '''5''' reactions found over '''9''' reactions in the full pathway
+** 3 reconstruction source(s) associated:
-* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
+*** [[annotation-experimental_annotation]]
-** '''8''' reactions found over '''11''' reactions in the full pathway
+*** [[annotation-in-silico_annotation]]
-* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+*** [[orthology-esiliculosus]]
-** '''10''' reactions found over '''10''' reactions in the full pathway
+* [[SUCCCOASYN-RXN]]
-* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+** 2 associated gene(s):
-** '''8''' reactions found over '''14''' reactions in the full pathway
+*** [[Tiso_gene_15846]]
-* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
+*** [[Tiso_gene_11866]]
-** '''11''' reactions found over '''11''' reactions in the full pathway
+** 7 reconstruction source(s) associated:
-* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+*** [[annotation-experimental_annotation]]
-** '''7''' reactions found over '''10''' reactions in the full pathway
+*** [[orthology-esiliculosus]]
-* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+*** [[annotation-in-silico_annotation]]
-** '''14''' reactions found over '''18''' reactions in the full pathway
+*** [[orthology-athaliana]]
-* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+*** [[orthology-synechocystis]]
-** '''10''' reactions found over '''12''' reactions in the full pathway
+*** [[manual-primary_network]]
-== Reconstruction information  ==
+*** [[orthology-creinhardtii]]
-* Category: [[orthology]]
+== Reaction(s) not found ==
-** Source: [[orthology-athaliana]]
+* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
-*** Tool: [[pantograph]]
+* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12912 RXN-12912]
-** Source: [[orthology-creinhardtii]]
+* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
-*** Tool: [[pantograph]]
-** Source: [[orthology-synechocystis]]
-*** Tool: [[pantograph]]
-** Source: [[orthology-esiliculosus]]
-*** Tool: [[pantograph]]
-* Category: [[manual]]
-** Source: [[manual-primary_network]]
-* Category: [[annotation]]
-** Source: [[annotation-in-silico_annotation]]
-*** Tool: [[pathwaytools]]
-** Source: [[annotation-experimental_annotation]]
-*** Tool: [[pathwaytools]]
 == External links  ==
-* RHEA:
+{{#set: taxonomic range=TAX-1117}}
-** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10164 10164]
+{{#set: taxonomic range=TAX-3035}}
-* LIGAND-RXN:
+{{#set: taxonomic range=TAX-1224}}
-** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
+{{#set: taxonomic range=TAX-201174}}
-* UNIPROT:
+{{#set: common name=TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)}}
-** [http://www.uniprot.org/uniprot/P04764 P04764]
+{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
-** [http://www.uniprot.org/uniprot/P07322 P07322]
+{{#set: reaction found=9}}
-** [http://www.uniprot.org/uniprot/P07323 P07323]
+{{#set: total reaction=12}}
-** [http://www.uniprot.org/uniprot/P06733 P06733]
+{{#set: completion rate=75.0}}
-** [http://www.uniprot.org/uniprot/P19140 P19140]
-** [http://www.uniprot.org/uniprot/P25704 P25704]
-** [http://www.uniprot.org/uniprot/P30575 P30575]
-** [http://www.uniprot.org/uniprot/P33675 P33675]
-** [http://www.uniprot.org/uniprot/P47647 P47647]
-** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
-** [http://www.uniprot.org/uniprot/P37869 P37869]
-** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
-** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
-** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
-** [http://www.uniprot.org/uniprot/P43806 P43806]
-** [http://www.uniprot.org/uniprot/P42448 P42448]
-** [http://www.uniprot.org/uniprot/P42848 P42848]
-** [http://www.uniprot.org/uniprot/Q05524 Q05524]
-** [http://www.uniprot.org/uniprot/P42897 P42897]
-** [http://www.uniprot.org/uniprot/P40370 P40370]
-** [http://www.uniprot.org/uniprot/P51913 P51913]
-** [http://www.uniprot.org/uniprot/P26300 P26300]
-** [http://www.uniprot.org/uniprot/Q42887 Q42887]
-** [http://www.uniprot.org/uniprot/P25696 P25696]
-** [http://www.uniprot.org/uniprot/P00924 P00924]
-** [http://www.uniprot.org/uniprot/P00925 P00925]
-** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
-** [http://www.uniprot.org/uniprot/P29201 P29201]
-** [http://www.uniprot.org/uniprot/P09104 P09104]
-** [http://www.uniprot.org/uniprot/P21550 P21550]
-** [http://www.uniprot.org/uniprot/P08734 P08734]
-** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
-** [http://www.uniprot.org/uniprot/P15429 P15429]
-** [http://www.uniprot.org/uniprot/P13929 P13929]
-** [http://www.uniprot.org/uniprot/P15007 P15007]
-** [http://www.uniprot.org/uniprot/P17182 P17182]
-** [http://www.uniprot.org/uniprot/P17183 P17183]
-** [http://www.uniprot.org/uniprot/P26301 P26301]
-** [http://www.uniprot.org/uniprot/P31683 P31683]
-** [http://www.uniprot.org/uniprot/Q54274 Q54274]
-** [http://www.uniprot.org/uniprot/P42896 P42896]
-** [http://www.uniprot.org/uniprot/Q27727 Q27727]
-** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
-** [http://www.uniprot.org/uniprot/P48285 P48285]
-** [http://www.uniprot.org/uniprot/Q12007 Q12007]
-** [http://www.uniprot.org/uniprot/P42222 P42222]
-** [http://www.uniprot.org/uniprot/P75189 P75189]
-** [http://www.uniprot.org/uniprot/P77972 P77972]
-** [http://www.uniprot.org/uniprot/Q49059 Q49059]
-** [http://www.uniprot.org/uniprot/P42895 P42895]
-** [http://www.uniprot.org/uniprot/Q42971 Q42971]
-** [http://www.uniprot.org/uniprot/Q43130 Q43130]
-** [http://www.uniprot.org/uniprot/O69174 O69174]
-{{#set: direction=REVERSIBLE}}
-{{#set: common name=bifunctional_enolase2transcriptionalactivator}}
-{{#set: common name=bifunctional_enolase_2_transcriptional_activator}}
-{{#set: common name=enolase_1}}
-{{#set: ec number=EC-4.2.1.11}}
-{{#set: gene associated=Tiso_gene_14718|Tiso_gene_8720|Tiso_gene_5619|Tiso_gene_13317}}
-{{#set: in pathway=PWY-1042|P341-PWY|PWY-7003|PWY-1622|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|ANAGLYCOLYSIS-PWY|PWY-7218|NPGLUCAT-PWY|P124-PWY|PWY-2221|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|P122-PWY|PWY66-399}}
-{{#set: reconstruction category=orthology|manual|annotation}}
-{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
-{{#set: reconstruction tool=pantograph|pathwaytools}}

Difference between revisions of "PWY-6969"

Latest revision as of 19:32, 21 March 2018

Contents

Pathway PWY-6969

Reaction(s) found

Reaction(s) not found

External links

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