Difference between revisions of "Tiso gene 6558"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
(Created page with "Category:Gene == Gene Tiso_gene_6558 == * right end position: ** 8546 * transcription direction: ** POSITIVE * left end position: ** 7286 * centisome position: ** 60.41459...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
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== Gene Tiso_gene_6558 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8546
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* common name:
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* transcription direction:
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** atp-dependent_rna_helicase_ded1
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** POSITIVE
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** rna_helicase
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* left end position:
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** dead_box_rna_helicase
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** 7286
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** ORF
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* centisome position:
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** dead_box_helicase
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** 60.414593   
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** atp-dependent_rna_helicase-like_protein_db10
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.2.23-RXN]]
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** 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 wound RNA[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c] '''+''' 1 H+[c]
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* Reaction: [[4.2.99.18-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN0-2601]]
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* [[Tiso_gene_13862]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15465]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11551]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5272]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_17804]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9370]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13864]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14774]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17819]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13863]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=8546}}
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{{#set: common name=atp-dependent_rna_helicase_ded1}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=rna_helicase}}
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{{#set: left end position=7286}}
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{{#set: common name=dead_box_rna_helicase}}
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{{#set: centisome position=60.414593    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=3.2.2.23-RXN|4.2.99.18-RXN|RXN0-2601}}
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{{#set: common name=dead_box_helicase}}
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{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
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{{#set: ec number=EC-3.6.4.13}}
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{{#set: gene associated=Tiso_gene_13862|Tiso_gene_15465|Tiso_gene_11551|Tiso_gene_5272|Tiso_gene_17804|Tiso_gene_9370|Tiso_gene_13864|Tiso_gene_14774|Tiso_gene_17819|Tiso_gene_13863}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:59, 21 March 2018

Gene Tiso_gene_6558

  • right end position:
    • 8546
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7286
  • centisome position:
    • 60.414593
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6558&oldid=45088"