Difference between revisions of "Category:Reaction"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] == * direction: ** LEFT-TO-RIGHT *...")
(Created page with "{{#ask: Category:Reaction | ?common name | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction source | ?gene associated | ?in pathway }}")
 
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[[Category:Reaction]]
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{{#ask: [[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] ==
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| ?common name
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* direction:
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| ?ec number
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** LEFT-TO-RIGHT
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| ?reconstruction category
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* common name:
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| ?reconstruction tool
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** acyl---udp-n-acetylglucosamine_acyltransferase
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| ?reconstruction source
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* ec number:
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| ?gene associated
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** [http://enzyme.expasy.org/EC/2.3.1.129 EC-2.3.1.129]
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| ?in pathway
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* Synonym(s):
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}}
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== Reaction Formula ==
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* With identifiers:
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** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[UDP-OHMYR-ACETYLGLUCOSAMINE]][c] '''+''' 1 [[ACP]][c]
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* With common name(s):
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** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c] '''=>''' 1 UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine[c] '''+''' 1 a holo-[acyl-carrier protein][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_19198]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R04567 R04567]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9PIM1 Q9PIM1]
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** [http://www.uniprot.org/uniprot/Q9JX26 Q9JX26]
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** [http://www.uniprot.org/uniprot/P43887 P43887]
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** [http://www.uniprot.org/uniprot/P32200 P32200]
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** [http://www.uniprot.org/uniprot/P32201 P32201]
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** [http://www.uniprot.org/uniprot/P0A722 P0A722]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=acyl---udp-n-acetylglucosamine_acyltransferase}}
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{{#set: ec number=EC-2.3.1.129}}
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{{#set: gene associated=Tiso_gene_19198}}
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{{#set: in pathway=NAGLIPASYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:26, 21 March 2018

 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceGene associatedIn pathway
1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN1-acylglycerol-3-phosphate o-acyltransferaseEC-2.3.1.51Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 13959PWY0-1319
PWY-5981
1-PHOSPHATIDYLINOSITOL-KINASE-RXNPhosphatidylinositol-4-kinase
Phosphatidylinositol kinase
Phosphatidylinositol 4-kinase beta
ORF		EC-2.7.1.67Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 18530
Tiso gene 2572
Tiso gene 12389
Tiso gene 18529
Tiso gene 17239
Tiso gene 17238
Tiso gene 17240		PWY-6352
PWY-6351
1.1.1.145-RXN3-beta hydroxysteroid dehydrogenase isomerase
ORF		EC-1.1.1.145Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 11016
Tiso gene 2957
Tiso gene 18774
Tiso gene 897
1.1.1.170-RXNEC-1.1.1.170OrthologyPantographOrthology-esiliculosusTiso gene 897
1.1.1.211-RXNLong chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)EC-1.1.1.211AnnotationPathwaytoolsAnnotation-experimental annotationTiso gene 14262
1.1.1.255-RXNEC-1.1.1.255AnnotationPathwaytoolsAnnotation-in-silico annotationPWY-3861
1.1.1.271-RXNGDP-L-fucose synthaseEC-1.1.1.271Orthology
Annotation		Pantograph
Pathwaytools		Orthology-athaliana
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 16970PWY-66
1.1.1.274-RXNOxidoreductase
Aldo keto reductase		EC-1.1.1.274AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 8988
Tiso gene 18748		PWY-7165
KETOGLUCONMET-PWY
1.1.1.34-RXNORF
Mitochondrial carrier protein		EC-1.1.1.34AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 16182
Tiso gene 17889		PWY-922
PWY-6174
PWY-7391
PWY-7524
1.1.1.39-RXNMitochondrial malic enzyme
ORF		EC-1.1.1.38
EC-1.1.1.39		Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 12896
Tiso gene 6675
Tiso gene 12200		PWY-3641
GLUCONEO-PWY
PWY-7384
PWY-7686
PWY-7115
PWY-7118
1.1.1.8-RXNORF
Glycerol-3-phosphate dehydrogenase		EC-1.1.1.8Orthology
Manual
Annotation		Pantograph
Pathwaytools		Annotation-experimental annotation
Orthology-esiliculosus
Annotation-in-silico annotation
Orthology-synechocystis
Manual-primary network
Orthology-creinhardtii		Tiso gene 13013
Tiso gene 15777
Tiso gene 6069
Tiso gene 2810
Tiso gene 2811
Tiso gene 3718		PWY-6118
PWY-7385
PWY-7411
1.1.3.37-RXNORF
Xylitol oxidase
Mitochondrial l-galactono- -lactone dehydrogenase		EC-1.1.3.37AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 14187
Tiso gene 6787
Tiso gene 210		PWY3O-6
1.1.3.41-RXNXylitol oxidaseEC-1.1.3.41AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 14187
1.1.4.1-RXNVitamin k epoxide reductase complexEC-1.17.4.4AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 11760
1.10.2.2-RXNCytochrome b6-fcomplexiron-sulfurchloroplastic
Ubiquinol-cytochrome c reductase
Probable mitochondrial-processingpeptidasesubunitbeta		EC-1.10.2.2Orthology
Manual
Annotation		Pantograph
Pathwaytools		Annotation-experimental annotation
Manual-primary network
Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 7235
Tiso gene 9627
Tiso gene 4973
Tiso gene 18330
Tiso gene 15926		PWY-7279
PWY-7082
PWY-3781
1.11.1.12-RXNEC-1.11.1.12AnnotationPathwaytoolsAnnotation-experimental annotation
Annotation-in-silico annotation		PWY-4081
1.11.1.15-RXNAlpha beta hydrolase fold protein
Peroxiredoxin		EC-1.11.1.15AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 10066
Tiso gene 2589
1.13.11.6-RXN3-hydroxyanthranilate 3,4-dioxygenaseEC-1.13.11.6AnnotationPathwaytoolsAnnotation-experimental annotationTiso gene 10922PWY-5651
PWY-5647
PWY-6309
PWY-6505
1.14.11.18-RXNProtein involved in biosynthesis of mitomycin antibiotics polyketide fumonisinEC-1.14.11.18Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 16200
Tiso gene 561
Tiso gene 14450
Tiso gene 14707
Tiso gene 13319
1.14.11.19-RXNOrthologyPantographOrthology-esiliculosusTiso gene 3330
1.14.11.2-RXNProlyl 4-hydroxylase
ORF		EC-1.14.11.2Orthology
Annotation		Pantograph
Pathwaytools		Annotation-experimental annotation
Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 9165
Tiso gene 16122
Tiso gene 17919
Tiso gene 18235
Tiso gene 15594
Tiso gene 9455
Tiso gene 18208
Tiso gene 1468
Tiso gene 13008
Tiso gene 8652
Tiso gene 4246
Tiso gene 3021
Tiso gene 9227
Tiso gene 17593
Tiso gene 292
Tiso gene 9873
Tiso gene 9035
Tiso gene 6296
Tiso gene 9636
Tiso gene 16842
Tiso gene 19638
Tiso gene 18933
Tiso gene 2158
Tiso gene 18145
Tiso gene 15328
Tiso gene 18689
Tiso gene 2280
Tiso gene 17823
1.14.13.70-RXNEC-1.14.13.70OrthologyPantographOrthology-esiliculosusTiso gene 8263PWY-2541
1.14.13.78-RXNEnt-kaurene 19-hydroxylaseOrthologyPantographOrthology-athalianaTiso gene 1547
Tiso gene 8263		PWY-5047
PWY-5034
1.14.13.79-RXNEnt-kaurenoate monooxygenaseOrthologyPantographOrthology-esiliculosusTiso gene 8263
Tiso gene 3577		PWY-5047
PWY-5034
1.14.13.8-RXNORF
Fad-containing monooxygenase		EC-1.14.13.8Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 9613
Tiso gene 4
Tiso gene 9139
Tiso gene 10094
1.14.19.1-RXNEC-1.14.19.1OrthologyPantographOrthology-creinhardtii
Orthology-esiliculosus		Tiso gene 1497
Tiso gene 9580
Tiso gene 8027
Tiso gene 18056
Tiso gene 19322
Tiso gene 7427
Tiso gene 19215		PWY-5996
1.14.19.3-RXNEC-1.14.19.3OrthologyPantographOrthology-esiliculosusTiso gene 2508PWY-6000
1.14.21.6-RXNEC-1.14.19.20OrthologyPantographOrthology-esiliculosusTiso gene 5446PWY66-341
PWY66-3
1.18.1.2-RXNFerredoxin--nadp embryochloroplastic
Ferredoxin--nadp root isozyme chloroplastic		EC-1.18.1.2Orthology
Manual
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 20054
Tiso gene 19031
Tiso gene 17381
Tiso gene 17170
Tiso gene 20055
Tiso gene 20168		PWY-7230
PWY-101
1.2.1.13-RXNGlyceraldehyde-3-phosphate dehydrogenaseEC-1.2.1.13Manual
Annotation		PathwaytoolsAnnotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation		Tiso gene 6765
Tiso gene 20000
Tiso gene 10646
Tiso gene 6766		CALVIN-PWY
1.2.1.25-RXN3-methyl-2-oxobutanoate dehydrogenaseEC-1.2.1.25AnnotationPathwaytoolsAnnotation-experimental annotation
Annotation-in-silico annotation		Tiso gene 11793
Tiso gene 3260		VALDEG-PWY
1.2.1.27-RXNMethylmalonate-semialdehyde dehydrogenaseEC-1.2.1.27Orthology
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 11323PWY-5642
1.2.1.31-RXNPolyketide synthase
ORF		EC-1.2.1.31AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 6563
Tiso gene 16719
Tiso gene 5425
Tiso gene 5424
Tiso gene 6562		LYSINE-DEG1-PWY
1.2.1.65-RXNEC-1.2.1.65AnnotationPathwaytoolsAnnotation-in-silico annotationPWY-5427
1.2.4.4-RXN3-methyl-2-oxobutanoate dehydrogenase
2-oxoisovalerate dehydrogenase alpha subunit mitochondrial		EC-1.2.4.4Orthology
Annotation		Pantograph
Pathwaytools		Annotation-experimental annotation
Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 18084
Tiso gene 11793
Tiso gene 3260		PWY-5046
1.21.3.1-RXNEC-1.21.3.1OrthologyPantographOrthology-esiliculosusTiso gene 3330PWY-5629
1.3.1.20-RXNDihydrodiol dehydrogenaseEC-1.3.1.20AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 10406
1.3.1.9-RXNEC-1.3.1.9OrthologyPantographOrthology-esiliculosusTiso gene 10778
1.3.7.3-RXNEC-1.3.7.3OrthologyPantographOrthology-esiliculosusTiso gene 17350PWY-5915
PWY-7579
1.3.7.4-RXNEC-1.3.7.4OrthologyPantographOrthology-athaliana
Orthology-esiliculosus		Tiso gene 17350PWY-7170
1.3.99.23-RXNCarotenoid isomerase
Carotene isomerase
Fad nad -binding oxidoreductase domain-containing protein
Carotenoid isomerase-like protein
All-trans- -dihydroretinol saturase
ORF		EC-1.3.99.23AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 13369
Tiso gene 9534
Tiso gene 3092
Tiso gene 917
Tiso gene 13367
Tiso gene 16795
Tiso gene 16794
1.3.99.5-RXN3-oxo-5-alpha-steroid 4-dehydrogenaseEC-1.3.1.22AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 14327
1.4.3.19-RXNEC-1.4.3.19OrthologyPantographOrthology-synechocystisTiso gene 16652
Tiso gene 13537
Tiso gene 11756		PWY-7396
1.5.1.19-RXNEC-1.5.1.19OrthologyPantographOrthology-esiliculosusTiso gene 8893
1.5.1.20-RXNMethylenetetrahydrofolate reductase
-methylenetetrahydrofolate reductase		EC-1.5.1.20Orthology
Manual
Annotation		Pantograph
Pathwaytools		Annotation-in-silico annotation
Manual-primary network
Annotation-experimental annotation
Orthology-esiliculosus		Tiso gene 16954
Tiso gene 14582		PWY-2201
1CMET2-PWY
CODH-PWY
PWY-3841
1.5.1.7-RXNEC-1.5.1.7OrthologyPantographOrthology-athalianaTiso gene 1156LYSINE-AMINOAD-PWY
1.5.1.8-RXNEC-1.5.1.8Orthology
Annotation		Pantograph
Pathwaytools		Orthology-athaliana
Annotation-in-silico annotation		Tiso gene 1156LYSINE-DEG1-PWY
1.5.1.9-RXNSaccharopine dehydrogenaseEC-1.5.1.9Orthology
Annotation		Pantograph
Pathwaytools		Orthology-athaliana
Annotation-in-silico annotation
Orthology-esiliculosus		Tiso gene 9366
Tiso gene 7038
Tiso gene 7039
Tiso gene 4160
Tiso gene 10095
Tiso gene 1156		LYSINE-DEG1-PWY
1.5.5.1-RXNEC-1.5.5.1Orthology
Manual		PantographManual-primary network
Orthology-esiliculosus		Tiso gene 18526
1.6.4.4-RXNNucleoredoxin
ORF		EC-1.8.1.8AnnotationPathwaytoolsAnnotation-in-silico annotationTiso gene 475
Tiso gene 15704
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Pages in category "Reaction"

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