Difference between revisions of "Category:Reaction"

Latest revision as of 20:26, 21 March 2018

	Common name	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN	1-acylglycerol-3-phosphate o-acyltransferase	EC-2.3.1.51	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 13959	PWY0-1319 PWY-5981
1-PHOSPHATIDYLINOSITOL-KINASE-RXN	Phosphatidylinositol-4-kinase Phosphatidylinositol kinase Phosphatidylinositol 4-kinase beta ORF	EC-2.7.1.67	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 18530 Tiso gene 2572 Tiso gene 12389 Tiso gene 18529 Tiso gene 17239 Tiso gene 17238 Tiso gene 17240	PWY-6352 PWY-6351
1.1.1.145-RXN	3-beta hydroxysteroid dehydrogenase isomerase ORF	EC-1.1.1.145	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11016 Tiso gene 2957 Tiso gene 18774 Tiso gene 897
1.1.1.170-RXN		EC-1.1.1.170	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 897
1.1.1.211-RXN	Long chain 3-hydroxyacyl-CoA dehydrogenase (Peroxisomal)	EC-1.1.1.211	Annotation	Pathwaytools	Annotation-experimental annotation	Tiso gene 14262
1.1.1.255-RXN		EC-1.1.1.255	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-3861
1.1.1.271-RXN	GDP-L-fucose synthase	EC-1.1.1.271	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 16970	PWY-66
1.1.1.274-RXN	Oxidoreductase Aldo keto reductase	EC-1.1.1.274	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 8988 Tiso gene 18748	PWY-7165 KETOGLUCONMET-PWY
1.1.1.34-RXN	ORF Mitochondrial carrier protein	EC-1.1.1.34	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 16182 Tiso gene 17889	PWY-922 PWY-6174 PWY-7391 PWY-7524
1.1.1.39-RXN	Mitochondrial malic enzyme ORF	EC-1.1.1.38 EC-1.1.1.39	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 12896 Tiso gene 6675 Tiso gene 12200	PWY-3641 GLUCONEO-PWY PWY-7384 PWY-7686 PWY-7115 PWY-7118
1.1.1.8-RXN	ORF Glycerol-3-phosphate dehydrogenase	EC-1.1.1.8	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 13013 Tiso gene 15777 Tiso gene 6069 Tiso gene 2810 Tiso gene 2811 Tiso gene 3718	PWY-6118 PWY-7385 PWY-7411
1.1.3.37-RXN	ORF Xylitol oxidase Mitochondrial l-galactono- -lactone dehydrogenase	EC-1.1.3.37	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14187 Tiso gene 6787 Tiso gene 210	PWY3O-6
1.1.3.41-RXN	Xylitol oxidase	EC-1.1.3.41	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14187
1.1.4.1-RXN	Vitamin k epoxide reductase complex	EC-1.17.4.4	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11760
1.10.2.2-RXN	Cytochrome b6-fcomplexiron-sulfurchloroplastic Ubiquinol-cytochrome c reductase Probable mitochondrial-processingpeptidasesubunitbeta	EC-1.10.2.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 7235 Tiso gene 9627 Tiso gene 4973 Tiso gene 18330 Tiso gene 15926	PWY-7279 PWY-7082 PWY-3781
1.11.1.12-RXN		EC-1.11.1.12	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation		PWY-4081
1.11.1.15-RXN	Alpha beta hydrolase fold protein Peroxiredoxin	EC-1.11.1.15	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10066 Tiso gene 2589
1.13.11.6-RXN	3-hydroxyanthranilate 3,4-dioxygenase	EC-1.13.11.6	Annotation	Pathwaytools	Annotation-experimental annotation	Tiso gene 10922	PWY-5651 PWY-5647 PWY-6309 PWY-6505
1.14.11.18-RXN	Protein involved in biosynthesis of mitomycin antibiotics polyketide fumonisin	EC-1.14.11.18	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 16200 Tiso gene 561 Tiso gene 14450 Tiso gene 14707 Tiso gene 13319
1.14.11.19-RXN			Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 3330
1.14.11.2-RXN	Prolyl 4-hydroxylase ORF	EC-1.14.11.2	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9165 Tiso gene 16122 Tiso gene 17919 Tiso gene 18235 Tiso gene 15594 Tiso gene 9455 Tiso gene 18208 Tiso gene 1468 Tiso gene 13008 Tiso gene 8652 Tiso gene 4246 Tiso gene 3021 Tiso gene 9227 Tiso gene 17593 Tiso gene 292 Tiso gene 9873 Tiso gene 9035 Tiso gene 6296 Tiso gene 9636 Tiso gene 16842 Tiso gene 19638 Tiso gene 18933 Tiso gene 2158 Tiso gene 18145 Tiso gene 15328 Tiso gene 18689 Tiso gene 2280 Tiso gene 17823
1.14.13.70-RXN		EC-1.14.13.70	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 8263	PWY-2541
1.14.13.78-RXN	Ent-kaurene 19-hydroxylase		Orthology	Pantograph	Orthology-athaliana	Tiso gene 1547 Tiso gene 8263	PWY-5047 PWY-5034
1.14.13.79-RXN	Ent-kaurenoate monooxygenase		Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 8263 Tiso gene 3577	PWY-5047 PWY-5034
1.14.13.8-RXN	ORF Fad-containing monooxygenase	EC-1.14.13.8	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9613 Tiso gene 4 Tiso gene 9139 Tiso gene 10094
1.14.19.1-RXN		EC-1.14.19.1	Orthology	Pantograph	Orthology-creinhardtii Orthology-esiliculosus	Tiso gene 1497 Tiso gene 9580 Tiso gene 8027 Tiso gene 18056 Tiso gene 19322 Tiso gene 7427 Tiso gene 19215	PWY-5996
1.14.19.3-RXN		EC-1.14.19.3	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 2508	PWY-6000
1.14.21.6-RXN		EC-1.14.19.20	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 5446	PWY66-341 PWY66-3
1.18.1.2-RXN	Ferredoxin--nadp embryochloroplastic Ferredoxin--nadp root isozyme chloroplastic	EC-1.18.1.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 20054 Tiso gene 19031 Tiso gene 17381 Tiso gene 17170 Tiso gene 20055 Tiso gene 20168	PWY-7230 PWY-101
1.2.1.13-RXN	Glyceraldehyde-3-phosphate dehydrogenase	EC-1.2.1.13	Manual Annotation	Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation	Tiso gene 6765 Tiso gene 20000 Tiso gene 10646 Tiso gene 6766	CALVIN-PWY
1.2.1.25-RXN	3-methyl-2-oxobutanoate dehydrogenase	EC-1.2.1.25	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 11793 Tiso gene 3260	VALDEG-PWY
1.2.1.27-RXN	Methylmalonate-semialdehyde dehydrogenase	EC-1.2.1.27	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11323	PWY-5642
1.2.1.31-RXN	Polyketide synthase ORF	EC-1.2.1.31	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6563 Tiso gene 16719 Tiso gene 5425 Tiso gene 5424 Tiso gene 6562	LYSINE-DEG1-PWY
1.2.1.65-RXN		EC-1.2.1.65	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-5427
1.2.4.4-RXN	3-methyl-2-oxobutanoate dehydrogenase 2-oxoisovalerate dehydrogenase alpha subunit mitochondrial	EC-1.2.4.4	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 18084 Tiso gene 11793 Tiso gene 3260	PWY-5046
1.21.3.1-RXN		EC-1.21.3.1	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 3330	PWY-5629
1.3.1.20-RXN	Dihydrodiol dehydrogenase	EC-1.3.1.20	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10406
1.3.1.9-RXN		EC-1.3.1.9	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 10778
1.3.7.3-RXN		EC-1.3.7.3	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 17350	PWY-5915 PWY-7579
1.3.7.4-RXN		EC-1.3.7.4	Orthology	Pantograph	Orthology-athaliana Orthology-esiliculosus	Tiso gene 17350	PWY-7170
1.3.99.23-RXN	Carotenoid isomerase Carotene isomerase Fad nad -binding oxidoreductase domain-containing protein Carotenoid isomerase-like protein All-trans- -dihydroretinol saturase ORF	EC-1.3.99.23	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 13369 Tiso gene 9534 Tiso gene 3092 Tiso gene 917 Tiso gene 13367 Tiso gene 16795 Tiso gene 16794
1.3.99.5-RXN	3-oxo-5-alpha-steroid 4-dehydrogenase	EC-1.3.1.22	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 14327
1.4.3.19-RXN		EC-1.4.3.19	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 16652 Tiso gene 13537 Tiso gene 11756	PWY-7396
1.5.1.19-RXN		EC-1.5.1.19	Orthology	Pantograph	Orthology-esiliculosus	Tiso gene 8893
1.5.1.20-RXN	Methylenetetrahydrofolate reductase -methylenetetrahydrofolate reductase	EC-1.5.1.20	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 16954 Tiso gene 14582	PWY-2201 1CMET2-PWY CODH-PWY PWY-3841
1.5.1.7-RXN		EC-1.5.1.7	Orthology	Pantograph	Orthology-athaliana	Tiso gene 1156	LYSINE-AMINOAD-PWY
1.5.1.8-RXN		EC-1.5.1.8	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 1156	LYSINE-DEG1-PWY
1.5.1.9-RXN	Saccharopine dehydrogenase	EC-1.5.1.9	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9366 Tiso gene 7038 Tiso gene 7039 Tiso gene 4160 Tiso gene 10095 Tiso gene 1156	LYSINE-DEG1-PWY
1.5.5.1-RXN		EC-1.5.5.1	Orthology Manual	Pantograph	Manual-primary network Orthology-esiliculosus	Tiso gene 18526
1.6.4.4-RXN	Nucleoredoxin ORF	EC-1.8.1.8	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 475 Tiso gene 15704
... further results

Pages in category "Reaction"

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-[[Category:Reaction]]
+{{#ask: [[Category:Reaction]]
-== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UTPHEXPURIDYLYLTRANS-RXN UTPHEXPURIDYLYLTRANS-RXN] ==
+| ?common name
-* direction:
+| ?ec number
-** REVERSIBLE
+| ?reconstruction category
-* common name:
+| ?reconstruction tool
-** dp-n-acetylglucosamine_pyrophosphorylase
+| ?reconstruction source
-* ec number:
+| ?gene associated
-** [http://enzyme.expasy.org/EC/2.7.7.64 EC-2.7.7.64]
+| ?in pathway
-** [http://enzyme.expasy.org/EC/2.7.7.10 EC-2.7.7.10]
+}}
-* Synonym(s):
-== Reaction Formula ==
-* With identifiers:
-** 1 [[PROTON]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[UTP]][c] '''<=>''' 1 [[CPD-14553]][c] '''+''' 1 [[PPI]][c]
-* With common name(s):
-** 1 H+[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c] '''+''' 1 UTP[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c] '''+''' 1 diphosphate[c]
-== Genes associated with this reaction  ==
-Genes have been associated with this reaction based on different elements listed below.
-* Gene: [[Tiso_gene_9110]]
-** Source: [[annotation-experimental_annotation]]
-*** Assignment: AUTOMATED-NAME-MATCH
-* Gene: [[Tiso_gene_6457]]
-** Source: [[annotation-in-silico_annotation]]
-*** Assignment: EC-NUMBER
-* Gene: [[Tiso_gene_6459]]
-** Source: [[annotation-in-silico_annotation]]
-*** Assignment: EC-NUMBER
-* Gene: [[Tiso_gene_14796]]
-** Source: [[annotation-experimental_annotation]]
-*** Assignment: AUTOMATED-NAME-MATCH
-* Gene: [[Tiso_gene_17566]]
-** Source: [[annotation-experimental_annotation]]
-*** Assignment: AUTOMATED-NAME-MATCH
-* Gene: [[Tiso_gene_6458]]
-** Source: [[annotation-in-silico_annotation]]
-*** Assignment: EC-NUMBER
-== Pathways  ==
-* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
-** '''7''' reactions found over '''7''' reactions in the full pathway
-* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
-** '''3''' reactions found over '''3''' reactions in the full pathway
-== Reconstruction information  ==
-* Category: [[annotation]]
-** Source: [[annotation-experimental_annotation]]
-*** Tool: [[pathwaytools]]
-** Source: [[annotation-in-silico_annotation]]
-*** Tool: [[pathwaytools]]
-== External links  ==
-* RHEA:
-** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14209 14209]
-* LIGAND-RXN:
-** [http://www.genome.jp/dbget-bin/www_bget?R00502 R00502]
-* UNIPROT:
-** [http://www.uniprot.org/uniprot/P22714 P22714]
-** [http://www.uniprot.org/uniprot/P96994 P96994]
-** [http://www.uniprot.org/uniprot/P39575 P39575]
-** [http://www.uniprot.org/uniprot/P40908 P40908]
-{{#set: direction=REVERSIBLE}}
-{{#set: common name=dp-n-acetylglucosamine_pyrophosphorylase}}
-{{#set: ec number=EC-2.7.7.64}}
-{{#set: ec number=EC-2.7.7.10}}
-{{#set: gene associated=Tiso_gene_9110|Tiso_gene_6457|Tiso_gene_6459|Tiso_gene_14796|Tiso_gene_17566|Tiso_gene_6458}}
-{{#set: in pathway=PWY-6527|PWY-3821}}
-{{#set: reconstruction category=annotation}}
-{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
-{{#set: reconstruction tool=pathwaytools}}

Difference between revisions of "Category:Reaction"

Latest revision as of 20:26, 21 March 2018

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