Difference between revisions of "Tiso gene 17539"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12705 RXN-12705] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
 
(Created page with "Category:Gene == Gene Tiso_gene_17539 == * right end position: ** 3556 * transcription direction: ** NEGATIVE * left end position: ** 341 * centisome position: ** 9.40171...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12705 RXN-12705] ==
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== Gene Tiso_gene_17539 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3556
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* common name:
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* transcription direction:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** NEGATIVE
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** 3-hydroxyacyl-_dehydrogenase
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* left end position:
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** hydroxyacyl-coenzyme_a_mitochondrial
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** 341
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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** 9.40171   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PYRUVDEH-RXN]]
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** 1 [[CPD-13694]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-13695]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[RXN-12508]]
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** 1 24-hydroxy-3-oxocholest-4-en-26-oyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3,24-dioxocholest-4-en-26-oyl-CoA[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12583]]
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* [[Tiso_gene_5857]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[RXN0-1134]]
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_14027]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_14262]]
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* [[PYRUVDEHYD-PWY]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7218]]
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***EC-NUMBER
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* [[PWY-7384]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6886]]
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***EC-NUMBER
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* [[PWY-5537]]
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* [[Tiso_gene_14026]]
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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** IN-SILICO_ANNOTATION
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* [[PWY-5482]]
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18839]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18838]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
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** '''3''' reactions found over '''22''' reactions in the full pathway
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* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=3556}}
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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{{#set: left end position=341}}
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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{{#set: centisome position=9.40171    }}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: reaction associated=PYRUVDEH-RXN|RXN-12508|RXN-12583|RXN0-1134}}
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14027|Tiso_gene_14262|Tiso_gene_14026|Tiso_gene_18839|Tiso_gene_18838}}
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{{#set: pathway associated=PYRUVDEHYD-PWY|PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
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{{#set: in pathway=PWY-6946|PWY-6945}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:59, 21 March 2018

Gene Tiso_gene_17539

  • right end position:
    • 3556
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 341
  • centisome position:
    • 9.40171
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17539&oldid=45117"