Difference between revisions of "PWY-5188"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOATE-BETA-ALANINE-LIG-RXN PANTOATE-BETA-ALANINE-LIG-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PANTOATE-BETA-ALANINE-LIG-RXN PANTOATE-BETA-ALANINE-LIG-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
 
* common name:
 
* common name:
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** ketopantoate_hydroxymethyltransferase
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** tetrapyrrole biosynthesis I (from glutamate)
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.2.1 EC-6.3.2.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[L-PANTOATE]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PANTOTHENATE]][c] '''+''' 1 [[PROTON]][c]
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* [[GLURS-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 (R)-pantoate[c] '''+''' 1 β-alanine[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 (R)-pantothenate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_5379]]
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*** [[Tiso_gene_5046]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_14466]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14465]]
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* [[GLUTRNAREDUCT-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 0 associated gene:
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[manual-primary_network]]
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== Pathways  ==
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* [[GSAAMINOTRANS-RXN]]
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* [[PANTO-PWY]], phosphopantothenate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PANTO-PWY PANTO-PWY]
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** 1 associated gene(s):
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_8141]]
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== Reconstruction information  ==
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** 7 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[OHMETHYLBILANESYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11630]]
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*** [[Tiso_gene_14709]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PORPHOBILSYNTH-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13382]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[UROGENIIISYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11630]]
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*** [[Tiso_gene_18827]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10912 10912]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5188 PWY-5188]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02473 R02473]
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{{#set: taxonomic range=TAX-1117}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.uniprot.org/uniprot/P31663 P31663]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/Q9PIK2 Q9PIK2]
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{{#set: taxonomic range=TAX-3398}}
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** [http://www.uniprot.org/uniprot/P56061 P56061]
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{{#set: common name=tetrapyrrole biosynthesis I (from glutamate)}}
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** [http://www.uniprot.org/uniprot/P57035 P57035]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/Q9ZN52 Q9ZN52]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/Q09673 Q09673]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/O24210 O24210]
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** [http://www.uniprot.org/uniprot/Q9X713 Q9X713]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ketopantoate_hydroxymethyltransferase}}
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{{#set: ec number=EC-6.3.2.1}}
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{{#set: gene associated=Tiso_gene_14466|Tiso_gene_14465}}
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{{#set: in pathway=PANTO-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:38, 21 March 2018

Pathway PWY-5188

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5188&oldid=42944"