Difference between revisions of "CARBON-DIOXIDE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CARBON-DIOXIDE CARBON-DIOXIDE] == * smiles: ** C(=O)=O * common name: ** CO2 * inchi key: ** In...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CARBON-DIOXIDE CARBON-DIOXIDE] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** C(=O)=O
 
* common name:
 
* common name:
−
** ORF
+
** CO2
−
** threonine--trna_ligase
+
* inchi key:
−
* ec number:
+
** InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N
−
** [http://enzyme.expasy.org/EC/6.1.1.3 EC-6.1.1.3]
+
* molecular weight:
 +
** 44.01   
 
* Synonym(s):
 
* Synonym(s):
 +
** carbonic anhydride
 +
** carbonic acid gas
 +
** carbon dioxide
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[DETHIOBIOTIN-SYN-RXN]]
−
** 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
* [[TransportSeed_CARBON-DIOXIDE]]
−
* With common name(s):
+
* [[AIRCARBOXY-RXN]]
−
** 1 ATP[c] '''+''' 1 L-threonine[c] '''+''' 1 a tRNAthr[c] '''=>''' 1 an L-threonyl-[tRNAthr][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
−
 
+
* [[6.3.4.16-RXN]]
−
== Genes associated with this reaction  ==
+
== Reaction(s) known to produce the compound ==
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-16615]]
−
* Gene: [[Tiso_gene_13142]]
+
* [[R524-RXN]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[RXN-18201]]
−
*** Assignment: EC-NUMBER
+
* [[RXN-18203]]
−
** Source: [[annotation-experimental_annotation]]
+
* [[RXN-18205]]
−
*** Assignment: EC-NUMBER
+
* [[RXN-10828]]
−
** Source: [[orthology-esiliculosus]]
+
* [[RXN-18207]]
−
* Gene: [[Tiso_gene_4406]]
+
* [[RXN-18209]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[PREPHENATEDEHYDROG-RXN]]
−
*** Assignment: EC-NUMBER
+
* [[RXN-6081]]
−
** Source: [[annotation-experimental_annotation]]
+
* [[2.3.1.179-RXN]]
−
*** Assignment: EC-NUMBER
+
* [[RXN1G-324]]
−
== Pathways  ==
+
* [[RXN-7785]]
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[SAMDECARB-RXN]]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
* [[RXN-3142]]
−
== Reconstruction information  ==
+
* [[THREOSPON-RXN]]
−
* Category: [[orthology]]
+
* [[1.14.11.2-RXN]]
−
** Source: [[orthology-esiliculosus]]
+
* [[OXALATE-DECARBOXYLASE-RXN]]
−
*** Tool: [[pantograph]]
+
* [[FATTY-ACYL-COA-SYNTHASE-RXN]]
−
* Category: [[annotation]]
+
* [[RXN1G-218]]
−
** Source: [[annotation-in-silico_annotation]]
+
* [[RXN-18211]]
−
*** Tool: [[pathwaytools]]
+
* [[RXN-12893]]
−
** Source: [[annotation-experimental_annotation]]
+
* [[RXN0-2141]]
−
*** Tool: [[pathwaytools]]
+
* [[1.14.11.19-RXN]]
 +
* [[LEUCPEL-RXN]]
 +
* [[RXN-13158]]
 +
* [[RXNQT-4168]]
 +
* [[R06858]]
 +
* [[RXN0-1461]]
 +
* [[TransportSeed_CARBON-DIOXIDE]]
 +
* [[RXN1G-840]]
 +
* [[AMCL]]
 +
* [[PEPCARBOXYKIN-RXN]]
 +
* [[RXN-9539]]
 +
* [[RXN-9535]]
 +
* [[RXN-6201]]
 +
* [[ORNDECARBOX-RXN]]
 +
* [[UDP-GLUCURONATE-DECARBOXYLASE-RXN]]
 +
* [[RXN-14249]]
 +
* [[ACETOOHBUTSYN-RXN]]
 +
* [[RXN1G-445]]
 +
* [[RXN-7648]]
 +
* [[HPPD]]
 +
* [[P-PANTOCYSDECARB-RXN]]
 +
* [[RXN66-23]]
 +
* [[KETOISOCAPROATE-RXN]]
 +
* [[RXN1G-368]]
 +
* [[2.3.1.165-RXN]]
 +
* [[RXN-8391]]
 +
* [[RXN490-3641]]
 +
* [[RXN-13322]]
 +
* [[RXN-9632]]
 +
* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
 +
* [[RXN-9523]]
 +
* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
 +
* [[RXN-9527]]
 +
* [[RXN1G-236]]
 +
* [[RXN-9952]]
 +
* [[RXN-7800]]
 +
* [[ACETOLACTSYN-RXN]]
 +
* [[RXN-10815]]
 +
* [[R468-RXN]]
 +
* [[RXN-9648]]
 +
* [[MALONYL-COA-DECARBOXYLASE-RXN]]
 +
* [[orDCh]]
 +
* [[RXN1G-26]]
 +
* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
 +
* [[RXN-7775]]
 +
* [[OXALODECARB-RXN]]
 +
* [[RXN-13431]]
 +
* [[RXN-16082]]
 +
* [[RXN0-5222]]
 +
* [[QUINOPRIBOTRANS-RXN]]
 +
* [[7KAPSYN-RXN]]
 +
* [[RXN1G-306]]
 +
* [[MALIC-NADP-RXN]]
 +
* [[TYROSINE-DECARBOXYLASE-RXN]]
 +
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
 +
* [[RXN-16001]]
 +
* [[RXN-9654]]
 +
* [[RXNQT-4171]]
 +
* [[RXN-113]]
 +
* [[6PGLUCONDEHYDROG-RXN]]
 +
* [[RXN-14972]]
 +
* [[RXNQT-4178]]
 +
* [[RXN-115]]
 +
* [[ACETOACETATE-DECARBOXYLASE-RXN]]
 +
* [[RXNQT-4174]]
 +
* [[RXN-9531]]
 +
* [[RXN-9653]]
 +
* [[RXN-9652]]
 +
* [[RXN-9651]]
 +
* [[RXN-9650]]
 +
* [[PYRUVDEH-RXN]]
 +
* [[HEMN-RXN]]
 +
* [[RXN-9543]]
 +
* [[2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN]]
 +
* [[orDC]]
 +
* [[RXN-10658]]
 +
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
 +
* [[RXN-16629]]
 +
* [[RXN-11403]]
 +
* [[RXN-10654]]
 +
* [[RXN-16094]]
 +
* [[RXN-16621]]
 +
* [[RXN66-470]]
 +
* [[RXN-16625]]
 +
* [[2OXOGLUTDECARB-RXN]]
 +
* [[RXN-13296]]
 +
* [[RXN-13295]]
 +
* [[RXN-13294]]
 +
* [[RXN-602]]
 +
* [[1.1.1.39-RXN]]
 +
* [[RXN-16017]]
 +
* [[RXN-2902]]
 +
* [[RXN1G-499]]
 +
* [[RXN1G-1003]]
 +
* [[RXN-12610]]
 +
* [[RXN-12611]]
 +
* [[IGPSYN-RXN]]
 +
* [[RXNQT-4165]]
 +
* [[RXN66-18]]
 +
* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
 +
* [[RXN1G-138]]
 +
* [[RXN1F-93]]
 +
* [[RXN0-1134]]
 +
* [[RXN-6550]]
 +
* [[1.14.11.18-RXN]]
 +
* [[1.2.1.25-RXN]]
 +
* [[GLUTDECARBOX-RXN]]
 +
* [[RXN-11474]]
 +
* [[ARGININE-2-MONOOXYGENASE-RXN]]
 +
* [[RXN0-299]]
 +
* [[PHOSPHASERDECARB-RXN]]
 +
* [[RXN-11479]]
 +
* [[FTHFO]]
 +
* [[RXN-12583]]
 +
* [[DIAMINOPIMDECARB-RXN]]
 +
* [[RXN1G-132]]
 +
* [[RXN-527]]
 +
* [[DXS-RXN]]
 +
* [[OROTPDECARB-RXN]]
 +
* [[2.3.1.180-RXN]]
 +
* [[UROGENDECARBOX-RXN]]
 +
* [[RXN-11484]]
 +
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 +
* [[FATTY-ACID-PEROXIDASE-RXN]]
 +
* [[RXN-13442]]
 +
* [[RXN-171]]
 +
* [[RXN-8450]]
 +
* [[RXN-13441]]
 +
* [[RXN1F-169]]
 +
* [[RXN-5641]]
 +
* [[RXN-7745]]
 +
* [[RXN-10059]]
 +
* [[RXN-7697]]
 +
* [[RXN-2541]]
 +
* [[RXN-7922]]
 +
* [[orPDC]]
 +
* [[ASPDECARBOX-RXN]]
 +
* [[RXN66-313]]
 +
* [[RXN1F-165]]
 +
* [[LYSDECARBOX-RXN]]
 +
* [[RXN66-318]]
 +
* [[3-OXOACYL-ACP-SYNTH-RXN]]
 +
* [[2.5.1.64-RXN]]
 +
* [[RXN-14986]]
 +
* [[RXN3O-1803]]
 +
* [[RXN1F-168]]
 +
* [[RXN1F-162]]
 +
* [[RXN-13297]]
 +
* [[UGDC]]
 +
* [[RXN1F-167]]
 +
* [[RXN-9516]]
 +
* [[RXN1F-163]]
 +
== Reaction(s) of unknown directionality ==
 +
* [[ISOCITDEH-RXN]]
 +
* [[RXN0-5224]]
 +
* [[RXN1G-460]]
 +
* [[2.3.1.41-RXN]]
 +
* [[2.7.8.23-RXN]]
 +
* [[ExchangeSeed_CARBON-DIOXIDE]]
 +
* [[GCVP-RXN]]
 +
* [[CARBODEHYDRAT-RXN]]
 +
* [[RXN-10642]]
 +
* [[METHYLVALERATE-RXN]]
 +
* [[1.1.1.170-RXN]]
 +
* [[UREASE-RXN]]
 +
* [[RXN-8642]]
 +
* [[1.2.4.4-RXN]]
 +
* [[2KETO-3METHYLVALERATE-RXN]]
 +
* [[RXN-13926]]
 +
* [[PREPHENATEDEHYDRAT-RXN]]
 +
* [[CARBAMATE-KINASE-RXN]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UM-BBD-CPD : c0131
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24624 24624]
+
* CAS : 124-38-9
−
* LIGAND-RXN:
+
* BIGG : co2
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
* PUBCHEM:
−
* UNIPROT:
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=280 280]
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
* HMDB : HMDB01967
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
* LIGAND-CPD:
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
+
** [http://www.genome.jp/dbget-bin/www_bget?C00011 C00011]
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
+
* CHEMSPIDER:
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
+
** [http://www.chemspider.com/Chemical-Structure.274.html 274]
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
+
* CHEBI:
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16526 16526]
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
+
* METABOLIGHTS : MTBLC16526
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
+
{{#set: smiles=C(=O)=O}}
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
+
{{#set: common name=CO2}}
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
+
{{#set: inchi key=InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N}}
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
+
{{#set: molecular weight=44.01    }}
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
+
{{#set: common name=carbonic anhydride|carbonic acid gas|carbon dioxide}}
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
+
{{#set: consumed by=DETHIOBIOTIN-SYN-RXN|TransportSeed_CARBON-DIOXIDE|AIRCARBOXY-RXN|RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN|6.3.4.16-RXN}}
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
+
{{#set: produced by=RXN-16615|R524-RXN|RXN-18201|RXN-18203|RXN-18205|RXN-10828|RXN-18207|RXN-18209|PREPHENATEDEHYDROG-RXN|RXN-6081|2.3.1.179-RXN|RXN1G-324|RXN-7785|SAMDECARB-RXN|RXN-3142|THREOSPON-RXN|1.14.11.2-RXN|OXALATE-DECARBOXYLASE-RXN|FATTY-ACYL-COA-SYNTHASE-RXN|RXN1G-218|RXN-18211|RXN-12893|RXN0-2141|1.14.11.19-RXN|LEUCPEL-RXN|RXN-13158|RXNQT-4168|R06858|RXN0-1461|TransportSeed_CARBON-DIOXIDE|RXN1G-840|AMCL|PEPCARBOXYKIN-RXN|RXN-9539|RXN-9535|RXN-6201|ORNDECARBOX-RXN|UDP-GLUCURONATE-DECARBOXYLASE-RXN|RXN-14249|ACETOOHBUTSYN-RXN|RXN1G-445|RXN-7648|HPPD|P-PANTOCYSDECARB-RXN|RXN66-23|KETOISOCAPROATE-RXN|RXN1G-368|2.3.1.165-RXN|RXN-8391|RXN490-3641|RXN-13322|RXN-9632|SERINE-C-PALMITOYLTRANSFERASE-RXN|RXN-9523|DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN|RXN-9527|RXN1G-236|RXN-9952|RXN-7800|ACETOLACTSYN-RXN|RXN-10815|R468-RXN|RXN-9648|MALONYL-COA-DECARBOXYLASE-RXN|orDCh|RXN1G-26|2-KETO-ADIPATE-DEHYDROG-RXN|RXN-7775|OXALODECARB-RXN|RXN-13431|RXN-16082|RXN0-5222|QUINOPRIBOTRANS-RXN|7KAPSYN-RXN|RXN1G-306|MALIC-NADP-RXN|TYROSINE-DECARBOXYLASE-RXN|4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN|RXN-16001|RXN-9654|RXNQT-4171|RXN-113|6PGLUCONDEHYDROG-RXN|RXN-14972|RXNQT-4178|RXN-115|ACETOACETATE-DECARBOXYLASE-RXN|RXNQT-4174|RXN-9531|RXN-9653|RXN-9652|RXN-9651|RXN-9650|PYRUVDEH-RXN|HEMN-RXN|RXN-9543|2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN|orDC|RXN-10658|NARINGENIN-3-DIOXYGENASE-RXN|RXN-16629|RXN-11403|RXN-10654|RXN-16094|RXN-16621|RXN66-470|RXN-16625|2OXOGLUTDECARB-RXN|RXN-13296|RXN-13295|RXN-13294|RXN-602|1.1.1.39-RXN|RXN-16017|RXN-2902|RXN1G-499|RXN1G-1003|RXN-12610|RXN-12611|IGPSYN-RXN|RXNQT-4165|RXN66-18|PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|RXN1G-138|RXN1F-93|RXN0-1134|RXN-6550|1.14.11.18-RXN|1.2.1.25-RXN|GLUTDECARBOX-RXN|RXN-11474|ARGININE-2-MONOOXYGENASE-RXN|RXN0-299|PHOSPHASERDECARB-RXN|RXN-11479|FTHFO|RXN-12583|DIAMINOPIMDECARB-RXN|RXN1G-132|RXN-527|DXS-RXN|OROTPDECARB-RXN|2.3.1.180-RXN|UROGENDECARBOX-RXN|RXN-11484|3-OXOACYL-ACP-SYNTH-BASE-RXN|FATTY-ACID-PEROXIDASE-RXN|RXN-13442|RXN-171|RXN-8450|RXN-13441|RXN1F-169|RXN-5641|RXN-7745|RXN-10059|RXN-7697|RXN-2541|RXN-7922|orPDC|ASPDECARBOX-RXN|RXN66-313|RXN1F-165|LYSDECARBOX-RXN|RXN66-318|3-OXOACYL-ACP-SYNTH-RXN|2.5.1.64-RXN|RXN-14986|RXN3O-1803|RXN1F-168|RXN1F-162|RXN-13297|UGDC|RXN1F-167|RXN-9516|RXN1F-163}}
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
+
{{#set: reversible reaction associated=ISOCITDEH-RXN|RXN0-5224|RXN1G-460|2.3.1.41-RXN|2.7.8.23-RXN|ExchangeSeed_CARBON-DIOXIDE|GCVP-RXN|CARBODEHYDRAT-RXN|RXN-10642|METHYLVALERATE-RXN|1.1.1.170-RXN|UREASE-RXN|RXN-8642|1.2.4.4-RXN|2KETO-3METHYLVALERATE-RXN|RXN-13926|PREPHENATEDEHYDRAT-RXN|CARBAMATE-KINASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
+
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
+
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
+
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
+
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
+
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
+
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
+
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
+
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=threonine--trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.3}}
+
−
{{#set: gene associated=Tiso_gene_13142|Tiso_gene_4406}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:13, 21 March 2018

Metabolite CARBON-DIOXIDE

  • smiles:
    • C(=O)=O
  • common name:
    • CO2
  • inchi key:
    • InChIKey=CURLTUGMZLYLDI-UHFFFAOYSA-N
  • molecular weight:
    • 44.01
  • Synonym(s):
    • carbonic anhydride
    • carbonic acid gas
    • carbon dioxide

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • UM-BBD-CPD : c0131
  • CAS : 124-38-9
  • BIGG : co2
  • PUBCHEM:
  • HMDB : HMDB01967
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC16526





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