Difference between revisions of "Tiso gene 15256"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(Created page with "Category:Gene == Gene Tiso_gene_11016 == * left end position: ** 2656 * transcription direction: ** POSITIVE * right end position: ** 5075 * centisome position: ** 32.6892...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_11016 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2656
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* common name:
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* transcription direction:
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** isoleucine--trna_cytoplasmic
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** POSITIVE
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** isoleucine--trna_ligase
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* right end position:
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* ec number:
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** 5075
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** [http://enzyme.expasy.org/EC/6.1.1.5 EC-6.1.1.5]
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* centisome position:
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** 32.68923   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[1.1.1.145-RXN]]
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** 1 [[ILE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 L-isoleucine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAile[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-isoleucyl-[tRNAile][c]
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* [[DIHYDROKAEMPFEROL-4-REDUCTASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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* [[PEROXID-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* [[Tiso_gene_11779]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[RXN-1101]]
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-1106]]
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-1124]]
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* [[Tiso_gene_12496]]
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** [[pantograph]]-[[athaliana]]
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** IN-SILICO_ANNOTATION
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* [[RXN-12693]]
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***EC-NUMBER
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** in-silico_annotation
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** EXPERIMENTAL_ANNOTATION
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***ec-number
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***EC-NUMBER
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* [[RXN-12747]]
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** [[pantograph]]-[[esiliculosus]]
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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* [[RXN-12789]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** in-silico_annotation
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== Reconstruction information  ==
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***ec-number
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* [[orthology]]:
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* [[RXN-14240]]
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** [[pantograph]]:
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** in-silico_annotation
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*** [[esiliculosus]]
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***ec-number
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* [[annotation]]:
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* [[RXN-15288]]
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** [[pathwaytools]]:
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** in-silico_annotation
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*** [[experimental_annotation]]
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***ec-number
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*** [[in-silico_annotation]]
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* [[RXN-17352]]
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** in-silico_annotation
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***ec-number
 +
* [[RXN-600]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN-7784]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN-8635]]
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** in-silico_annotation
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***ec-number
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* [[RXN-9725]]
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** [[pantograph]]-[[athaliana]]
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* [[RXN66-342]]
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** in-silico_annotation
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***ec-number
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* [[RXN66-350]]
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** in-silico_annotation
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***ec-number
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* [[RXN66-353]]
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** in-silico_annotation
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***ec-number
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== Pathways associated ==
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* [[PWY-7299]]
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* [[PWY-7214]]
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* [[PWY-6824]]
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* [[PWY-5152]]
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* [[PWY-5461]]
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* [[PWY66-378]]
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* [[PWY-7445]]
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* [[PWY-6946]]
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* [[PWY-5469]]
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* [[PWY-6944]]
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* [[PWY-5466]]
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* [[PWY-6027]]
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* [[PWY-361]]
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* [[PWY-6948]]
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* [[PWY1F-823]]
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* [[PWY-6035]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2656}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11060 11060]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5075}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
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{{#set: centisome position=32.68923    }}
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* UNIPROT:
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{{#set: reaction associated=1.1.1.145-RXN|DIHYDROKAEMPFEROL-4-REDUCTASE-RXN|PEROXID-RXN|RXN-1101|RXN-1106|RXN-1124|RXN-12693|RXN-12747|RXN-12789|RXN-14240|RXN-15288|RXN-17352|RXN-600|RXN-7784|RXN-8635|RXN-9725|RXN66-342|RXN66-350|RXN66-353}}
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** [http://www.uniprot.org/uniprot/P18330 P18330]
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{{#set: pathway associated=PWY-7299|PWY-7214|PWY-6824|PWY-5152|PWY-5461|PWY66-378|PWY-7445|PWY-6946|PWY-5469|PWY-6944|PWY-5466|PWY-6027|PWY-361|PWY-6948|PWY1F-823|PWY-6035}}
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** [http://www.uniprot.org/uniprot/P36422 P36422]
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** [http://www.uniprot.org/uniprot/O29622 O29622]
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** [http://www.uniprot.org/uniprot/P47587 P47587]
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** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
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** [http://www.uniprot.org/uniprot/P46213 P46213]
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** [http://www.uniprot.org/uniprot/P41257 P41257]
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** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
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** [http://www.uniprot.org/uniprot/Q58357 Q58357]
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** [http://www.uniprot.org/uniprot/O83466 O83466]
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** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
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** [http://www.uniprot.org/uniprot/P56456 P56456]
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** [http://www.uniprot.org/uniprot/O58792 O58792]
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** [http://www.uniprot.org/uniprot/O84022 O84022]
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** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
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** [http://www.uniprot.org/uniprot/O66651 O66651]
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** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
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** [http://www.uniprot.org/uniprot/O27428 O27428]
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** [http://www.uniprot.org/uniprot/Q45477 Q45477]
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** [http://www.uniprot.org/uniprot/O51773 O51773]
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** [http://www.uniprot.org/uniprot/P46207 P46207]
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** [http://www.uniprot.org/uniprot/P41252 P41252]
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** [http://www.uniprot.org/uniprot/P41972 P41972]
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** [http://www.uniprot.org/uniprot/P48526 P48526]
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** [http://www.uniprot.org/uniprot/P75258 P75258]
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** [http://www.uniprot.org/uniprot/P73505 P73505]
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** [http://www.uniprot.org/uniprot/Q49024 Q49024]
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** [http://www.uniprot.org/uniprot/Q49074 Q49074]
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** [http://www.uniprot.org/uniprot/P43824 P43824]
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** [http://www.uniprot.org/uniprot/P09436 P09436]
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** [http://www.uniprot.org/uniprot/P00956 P00956]
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** [http://www.uniprot.org/uniprot/Q94425 Q94425]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=isoleucine--trna_cytoplasmic}}
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{{#set: common name=isoleucine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.5}}
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{{#set: gene associated=Tiso_gene_11779|Tiso_gene_12496}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:38, 10 January 2018

Gene Tiso_gene_11016

  • left end position:
    • 2656
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5075
  • centisome position:
    • 32.68923
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15256&oldid=18777"