Difference between revisions of "PWY-I9"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polypeptide_deformyla...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
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** polypeptide_deformylase
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** TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88]
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* Synonym(s):
 
* Synonym(s):
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** citric acid cycle
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** tricarboxylic acid cycle
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** Szent-Gyorgyi-Krebs cycle
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** Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''12''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[METHIONYL-PEPTIDE]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 a [protein] N-terminal-formyl-L-methionine[c] '''=>''' 1 formate[c] '''+''' 1 an N-terminal L-methionyl-[protein][c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14998]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* [[ACONITATEHYDR-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_13007]]
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== Reconstruction information  ==
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** 2 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-in-silico_annotation]]
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** [[pathwaytools]]:
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*** [[annotation-experimental_annotation]]
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*** [[in-silico_annotation]]
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* [[CITSYN-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18030]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCIT-CLEAV-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14008]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_1990]]
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*** [[Tiso_gene_2323]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_14377]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12912 RXN-12912]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1117}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635]
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{{#set: taxonomic range=TAX-3035}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=polypeptide_deformylase}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: ec number=EC-3.5.1.88}}
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{{#set: common name=TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)}}
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{{#set: gene associated=Tiso_gene_14998}}
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{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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{{#set: in pathway=}}
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{{#set: reaction found=9}}
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{{#set: reconstruction category=annotation}}
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{{#set: total reaction=12}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: completion rate=75.0}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:17, 18 March 2018

Pathway PWY-6969

  • taxonomic range:
  • common name:
    • TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
  • Synonym(s):
    • citric acid cycle
    • tricarboxylic acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

9 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-I9&oldid=23251"