Difference between revisions of "UROGENIIISYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCPEL-RXN LEUCPEL-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** uropor...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCPEL-RXN LEUCPEL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ORF
 +
** uroporphyrinogen_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.14.11.19 EC-1.14.11.19]
+
** [http://enzyme.expasy.org/EC/4.2.1.75 EC-4.2.1.75]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[LEUCOPELARGONIDIN-CMPD]][c] '''=>''' 1 [[PELARGONIDIN-CMPD]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 (2R,3S,4S)-leucopelargonidin[c] '''=>''' 1 pelargonidin[c] '''+''' 2 H2O[c] '''+''' 1 H+[c] '''+''' 1 succinate[c] '''+''' 1 CO2[c]
+
** 1 preuroporphyrinogen[c] '''=>''' 1 uroporphyrinogen-III[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_3330]]
+
* Gene: [[Tiso_gene_11630]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_18827]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7267]], anthocyanin biosynthesis (pelargonidin 3-O-glucoside): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7267 PWY-7267]
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04276 R04276]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P10746 P10746]
 +
** [http://www.uniprot.org/uniprot/P51163 P51163]
 +
** [http://www.uniprot.org/uniprot/P21248 P21248]
 +
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
 +
** [http://www.uniprot.org/uniprot/P09126 P09126]
 +
** [http://www.uniprot.org/uniprot/Q59294 Q59294]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.14.11.19}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_3330}}
+
{{#set: common name=uroporphyrinogen_synthase}}
−
{{#set: in pathway=PWY-7267}}
+
{{#set: ec number=EC-4.2.1.75}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_18827}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: in pathway=PWY-5189|PWY-5188}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:13, 21 March 2018

Reaction UROGENIIISYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • uroporphyrinogen_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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