Difference between revisions of "Tiso gene 18827"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
(Created page with "Category:Gene == Gene Tiso_gene_18827 == * right end position: ** 1668 * transcription direction: ** POSITIVE * left end position: ** 427 * centisome position: ** 15.43187...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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== Gene Tiso_gene_18827 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1668
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* common name:
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* transcription direction:
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** coproporphyrinogen-iii_oxidase
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** POSITIVE
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** coproporphyrinogen_iii_oxidase_chloroplast
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* left end position:
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** coproporphyrinogen_oxidase
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** 427
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
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** 15.431875   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[UROGENIIISYN-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
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* With common name(s):
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** 1 oxygen[c] '''+''' 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_3671]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_2247]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_13364]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13365]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2246]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-5189]]
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* [[PWY-5188]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1668}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=427}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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{{#set: centisome position=15.431875    }}
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* UNIPROT:
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{{#set: reaction associated=UROGENIIISYN-RXN}}
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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{{#set: pathway associated=PWY-5189|PWY-5188}}
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen-iii_oxidase}}
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{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
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{{#set: common name=coproporphyrinogen_oxidase}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Tiso_gene_3671|Tiso_gene_2247|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_2246}}
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{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:28, 21 March 2018

Gene Tiso_gene_18827

  • right end position:
    • 1668
  • transcription direction:
    • POSITIVE
  • left end position:
    • 427
  • centisome position:
    • 15.431875
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18827&oldid=41773"