Difference between revisions of "ISOCIT-CLEAV-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10655 RXN-10655] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-(acyl-carrier-pro...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate_lyase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10655 RXN-10655] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-oxoacyl-(acyl-carrier-protein)
+
** isocitrate_lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
+
** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-oxo-cis-D7-tetradecenoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[3-hydroxy-cis-D7-tetraecenoyl-ACPs]][c]
+
** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-cis-&Delta;7-tetradecenoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxy cis &Delta;7-tetradecenoyl-[acp][c]
+
** 1 D-threo-isocitrate[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 succinate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_13083]]
+
* Gene: [[Tiso_gene_14008]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_9885]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 34: Line 35:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13245 13245]
−
{{#set: ec number=EC-1.1.1.100}}
+
* PIR:
−
{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
−
{{#set: in pathway=PWY-6282}}
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28467 P28467]
 +
** [http://www.uniprot.org/uniprot/P42449 P42449]
 +
** [http://www.uniprot.org/uniprot/P20699 P20699]
 +
** [http://www.uniprot.org/uniprot/O13439 O13439]
 +
** [http://www.uniprot.org/uniprot/P28299 P28299]
 +
** [http://www.uniprot.org/uniprot/Q12031 Q12031]
 +
** [http://www.uniprot.org/uniprot/P46831 P46831]
 +
** [http://www.uniprot.org/uniprot/O24588 O24588]
 +
** [http://www.uniprot.org/uniprot/P49297 P49297]
 +
** [http://www.uniprot.org/uniprot/P45456 P45456]
 +
** [http://www.uniprot.org/uniprot/P45457 P45457]
 +
** [http://www.uniprot.org/uniprot/Q39577 Q39577]
 +
** [http://www.uniprot.org/uniprot/Q41084 Q41084]
 +
** [http://www.uniprot.org/uniprot/Q43097 Q43097]
 +
** [http://www.uniprot.org/uniprot/P28240 P28240]
 +
** [http://www.uniprot.org/uniprot/P20014 P20014]
 +
** [http://www.uniprot.org/uniprot/P17069 P17069]
 +
** [http://www.uniprot.org/uniprot/P15479 P15479]
 +
** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
 +
** [http://www.uniprot.org/uniprot/P25248 P25248]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=isocitrate_lyase}}
 +
{{#set: ec number=EC-4.1.3.1}}
 +
{{#set: gene associated=Tiso_gene_14008}}
 +
{{#set: in pathway=P105-PWY|GLYOXYLATE-BYPASS|PWY-6969}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:04, 21 March 2018

Reaction ISOCIT-CLEAV-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isocitrate_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-threo-isocitrate[c] <=> 1 glyoxylate[c] + 1 succinate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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