Difference between revisions of "RXN-17729"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] == * direction: ** LEFT-TO-RIGHT * common name: ** phytol dehydrogenase ** pol...")
(Created page with "Category:Gene == Gene Tiso_gene_2693 == * left end position: ** 5729 * transcription direction: ** POSITIVE * right end position: ** 9322 * centisome position: ** 30.83589...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] ==
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== Gene Tiso_gene_2693 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5729
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* common name:
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* transcription direction:
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** phytol dehydrogenase
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** POSITIVE
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** polyketide_synthase
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* right end position:
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** ORF
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** 9322
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
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** 30.835892   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[DIHYDLIPACETRANS-RXN]]
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** 1 [[PHYTOL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-14926]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** [[pantograph]]-[[creinhardtii]]
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* With common name(s):
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* [[PYRUVDEH-RXN]]
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** 1 phytol[c] '''+''' 1 NAD+[c] '''=>''' 1 phytenal[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-12508]]
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* [[Tiso_gene_6562]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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** experimental_annotation
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* [[Tiso_gene_6563]]
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***ec-number
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** IN-SILICO_ANNOTATION
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* [[RXN-12583]]
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***EC-NUMBER
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** in-silico_annotation
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* [[Tiso_gene_7649]]
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***ec-number
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** IN-SILICO_ANNOTATION
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** experimental_annotation
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***EC-NUMBER
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***ec-number
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* [[Tiso_gene_5424]]
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* [[RXN0-1133]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***automated-name-match
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* [[Tiso_gene_5425]]
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* [[RXN0-1134]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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== Pathways ==
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** experimental_annotation
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* [[PWY66-389]], phytol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389]
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***ec-number
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Pathways associated ==
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== Reconstruction information  ==
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* [[PYRUVDEHYD-PWY]]
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* [[annotation]]:
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* [[PWY-7218]]
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** [[pathwaytools]]:
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* [[PWY-7384]]
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*** [[in-silico_annotation]]
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* [[PWY-6886]]
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* [[PWY-5537]]
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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* [[PWY-5482]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=5729}}
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{{#set: common name=phytol dehydrogenase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: right end position=9322}}
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{{#set: common name=ORF}}
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{{#set: centisome position=30.835892    }}
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{{#set: ec number=EC-1.1.1.1}}
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{{#set: reaction associated=DIHYDLIPACETRANS-RXN|PYRUVDEH-RXN|RXN-12508|RXN-12583|RXN0-1133|RXN0-1134}}
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{{#set: gene associated=Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_7649|Tiso_gene_5424|Tiso_gene_5425}}
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{{#set: pathway associated=PYRUVDEHYD-PWY|PWY-7218|PWY-7384|PWY-6886|PWY-5537|GLYCOLYSIS-TCA-GLYOX-BYPASS|PWY-5482}}
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{{#set: in pathway=PWY66-389}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 01:13, 19 March 2018

Gene Tiso_gene_2693

  • left end position:
    • 5729
  • transcription direction:
    • POSITIVE
  • right end position:
    • 9322
  • centisome position:
    • 30.835892
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17729&oldid=29258"