Difference between revisions of "RXN-9520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.8.5 EC-2.7.8.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLYCEROL-3P]][c] '''+''' 1 [[CDPDIACYLGLYCEROL]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c]
+
** 1 [[R-3-hydroxyhexanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Hex-2-enoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sn-glycerol 3-phosphate[c] '''+''' 1 a CDP-diacylglycerol[c] '''=>''' 1 CMP[c] '''+''' 1 H+[c] '''+''' 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c]
+
** 1 a (3R)-3-hydroxyhexanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hex-2-enoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
+
−
** '''7''' reactions found over '''16''' reactions in the full pathway
+
−
* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
 
−
** [http://www.uniprot.org/uniprot/P46322 P46322]
 
−
** [http://www.uniprot.org/uniprot/P44528 P44528]
 
−
** [http://www.uniprot.org/uniprot/P47360 P47360]
 
−
** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
 
−
** [http://www.uniprot.org/uniprot/O25660 O25660]
 
−
** [http://www.uniprot.org/uniprot/O51663 O51663]
 
−
** [http://www.uniprot.org/uniprot/O67908 O67908]
 
−
** [http://www.uniprot.org/uniprot/Q49839 Q49839]
 
−
** [http://www.uniprot.org/uniprot/P75520 P75520]
 
−
** [http://www.uniprot.org/uniprot/P74372 P74372]
 
−
** [http://www.uniprot.org/uniprot/Q48959 Q48959]
 
−
** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.7.8.5}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-4.2.1.59}}
 +
{{#set: gene associated=Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 20:05, 21 March 2018

Reaction RXN-9520

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9520&oldid=39435"