Difference between revisions of "RXN-9520"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9520 RXN-9520] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** C4 photosynthetic carbon assimilation cycle, NAD-ME type
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, NAD-ME type
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''9''' reactions in the full pathway
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* With identifiers:
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* [[1.1.1.39-RXN]]
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** 1 [[R-3-hydroxyhexanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Hex-2-enoyl-ACPs]][c]
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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* With common name(s):
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* [[ASPAMINOTRANS-RXN]]
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** 1 a (3R)-3-hydroxyhexanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hex-2-enoyl-[acp][c]
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* [[MALATE-DEH-RXN]]
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* [[RXN-13697]]
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== Genes associated with this reaction  ==
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* [[RXN-13698]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN0-5224]]
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* Gene: [[Tiso_gene_135]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6884]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33090}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, NAD-ME type}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=C4 photosynthesis, NAD-ME type}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: reaction found=7}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction not found=9}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: completion rate=78.0}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:05, 21 March 2018

Reaction RXN-9520

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9520&oldid=39435"