Semantic search

	Common name	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
2.7.7.8-RXN	Polynucleotide phosphorylase polyadenylase	EC-2.7.7.8	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 2987
2.7.8.11-RXN		EC-2.7.8.11	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 6541	PHOSLIPSYN2-PWY PWY-7625 PWY-6351 PWY-6352
2.7.8.15-RXN		EC-2.7.8.15	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 1604	MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS
2.7.9.3-RXN	Selenophosphate synthetase	EC-2.7.9.3	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 5668 Tiso gene 5669 Tiso gene 14608	PWY0-901 PWY-6281
2.8.1.6-RXN	Biotin synthase	EC-2.8.1.6	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 10345	PWY0-1507 PWY-7380
2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN	4-methyl-2-oxopentanoate dehydrogenase (acylating)	EC-1.2.1	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation		LEU-DEG2-PWY
2OXOGLUTDECARB-RXN	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase mitochondrial Oxoglutarate decarboxylase 2-oxoglutarate decarboxylation	EC-1.2.4.2	Manual Annotation	Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation	Tiso gene 10209	PWY66-398 PWY-5084
2PGADEHYDRAT-RXN	Bifunctional enolase2transcriptionalactivator Bifunctional enolase 2 transcriptional activator Enolase 1	EC-4.2.1.11	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 5619 Tiso gene 13317 Tiso gene 14718 Tiso gene 8720	PWY-1042 P341-PWY PWY-2221 PWY-7124 PWY-1622 GLUCONEO-PWY GLYCOLYSIS NPGLUCAT-PWY ANAGLYCOLYSIS-PWY PWY-7218 PWY-6901 P124-PWY PWY-6886 PWY-5723 PWY-6142 P122-PWY PWY66-399 PWY-5484 PWY-7003
2TRANSKETO-RXN	Transketolase	EC-2.2.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Orthology-creinhardtii Annotation-experimental annotation Orthology-athaliana Annotation-in-silico annotation Manual-primary network	Tiso gene 11559 Tiso gene 5008	PWY-6901 CALVIN-PWY P21-PWY PWY-5723 PWY-1861 P185-PWY NONOXIPENT-PWY
3-CH3-2-OXOBUTANOATE-OH-CH3-XFER-RXN	Ketopantoate hydroxymethyltransferase	EC-2.1.2.11	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 14465 Tiso gene 14466	PANTO-PWY
3-DEHYDROQUINATE-DEHYDRATASE-RXN	Pentafunctional protein	EC-4.2.1.10	Orthology Manual Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Manual-primary network Orthology-esiliculosus	Tiso gene 5619 Tiso gene 14718 Tiso gene 8720 Tiso gene 5753 Tiso gene 5752	PWY-6163 PWY-6416 QUINATEDEG-PWY PWY-6707
3-DEHYDROQUINATE-SYNTHASE-RXN	3-dehydroquinate synthase Pentafunctional protein	EC-4.2.3.4	Orthology Manual Annotation	Pantograph Pathwaytools	Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 5753 Tiso gene 3446 Tiso gene 3445 Tiso gene 3974 Tiso gene 5752 Tiso gene 3447	PWY-6164
3-DEHYDROSPHINGANINE-REDUCTASE-RXN	3-ketodihydrosphingosine reductase	EC-1.1.1.102	Orthology Annotation	Pantograph Pathwaytools	Orthology-creinhardtii Annotation-in-silico annotation	Tiso gene 18518	PWY-5129 PWY3DJ-12 SPHINGOLIPID-SYN-PWY
3-HYDROXY-KYNURENINASE-RXN	Kynureninase	EC-3.7.1.3	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10684 Tiso gene 10685	PWY-5651 PWY-6309
3-HYDROXYDECANOYL-ACP-DEHYDR-RXN	Polyketide synthase	EC-2.3.1.86 EC-2.3.1.85 EC-4.2.1.59	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 136 Tiso gene 500 Tiso gene 6884 Tiso gene 135 Tiso gene 10876 Tiso gene 13394	FASYN-ELONG-PWY
3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN	3-hydroxyisobutyrate mitochondrial 3-hydroxyisobutyrate dehydrogenase Uncharacterized oxidoreductase	EC-1.1.1.31	Orthology Annotation	Pantograph Pathwaytools	Orthology-creinhardtii Orthology-athaliana Annotation-in-silico annotation Orthology-esiliculosus Annotation-experimental annotation	Tiso gene 19590 Tiso gene 5857 Tiso gene 19771 Tiso gene 7107 Tiso gene 19772 Tiso gene 19592	VALDEG-PWY
3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN	Enoyl- hydratase	EC-3.1.2.4	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Annotation-experimental annotation	Tiso gene 2224	VALDEG-PWY
3-ISOPROPYLMALDEHYDROG-RXN	3-isopropylmalate dehydrogenase Β-isopropylmalic enzyme Threo-Ds-3-isopropylmalate dehydrogenase		Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-experimental annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 2920	LEUSYN-PWY PWY-6871
3-ISOPROPYLMALISOM-RXN	3-isopropylmalate dehydratase ORF (2R,3S)-3-isopropylmalate hydro-lyase Β-isopropylmalate dehydratase Α-isopropylmalate isomerase 3-isopropylmalate hydro-lyase		Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-athaliana Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 12778	LEUSYN-PWY PWY-6871
3-OXOACID-COA-TRANSFERASE-RXN	Succinyl- :3-ketoacid-coenzyme a transferase mitochondrial	EC-2.8.3.5	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 6754
3-OXOACYL-ACP-REDUCT-RXN	Polyketide synthase 3-oxoacyl-(acyl-carrier-protein)	EC-2.3.1.86 EC-2.3.1.85 EC-1.1.1.100	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 10876 Tiso gene 13394 Tiso gene 9885 Tiso gene 135 Tiso gene 13083 Tiso gene 136 Tiso gene 500	FASYN-ELONG-PWY
3-OXOACYL-ACP-SYNTH-BASE-RXN	3-oxoacyl-synthase Polyketide synthase	EC-2.3.1.86 EC-2.3.1.85 EC-2.3.1.41	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 19302 Tiso gene 136 Tiso gene 14485 Tiso gene 13394 Tiso gene 5939 Tiso gene 135 Tiso gene 10876 Tiso gene 500 Tiso gene 15991	PWY-5965 PWY-5966 FASYN-INITIAL-PWY PWY-7388
3-OXOACYL-ACP-SYNTH-RXN	Polyketide synthase 3-oxoacyl-synthase	EC-2.3.1.86 EC-2.3.1.85 EC-2.3.1.41	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 136 Tiso gene 15991 Tiso gene 14485 Tiso gene 135 Tiso gene 13394 Tiso gene 500 Tiso gene 5939 Tiso gene 10876 Tiso gene 19302	FASYN-ELONG-PWY
3-OXOADIPATE-ENOL-LACTONASE-RXN	Alpha beta hydrolase fold protein	EC-3.1.1.24	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10066	PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY CATECHOL-ORTHO-CLEAVAGE-PWY
3.1.1.23-RXN	Lysophospholipase	EC-3.1.1.23	Annotation	Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 12375	LIPAS-PWY
3.1.1.47-RXN	Platelet-activating factor acetylhydrolase	EC-3.1.1.47	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 1774 Tiso gene 19650 Tiso gene 7990
3.1.1.64-RXN	All-trans-retinyl-palmitate hydrolase ORF Alpha beta hydrolase fold protein Alpha beta hydrolase Serine esterase Sialate o-acetylesterase-like protein Lysophospholipase Protein chloroplastic Para-nitrobenzyl esterase	EC-3.1.1.1	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 1538 Tiso gene 1537 Tiso gene 9429 Tiso gene 1922 Tiso gene 2556 Tiso gene 19778 Tiso gene 12686 Tiso gene 4606 Tiso gene 4650 Tiso gene 10066 Tiso gene 17029 Tiso gene 16518 Tiso gene 11351
3.1.13.1-RXN	Exosome complex exonuclease Ribonuclease II	EC-3.1.13.1	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11613 Tiso gene 11612
3.1.13.4-RXN	Nocturin	EC-3.1.13.4	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 17498 Tiso gene 17499 Tiso gene 17497
3.1.2.22-RXN	Palmitoyl-protein thioesterase 1	EC-3.1.2.22	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 12483
3.1.22.4-RXN	Structure-specific endonuclease subunit slx1 homolog	EC-3.1.22.4	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 11797
3.1.26.3-RXN	Low quality protein: ribonuclease 3-like Mini-ribonuclease 3 ORF	EC-3.1.26.3	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 10649 Tiso gene 10131 Tiso gene 10752 Tiso gene 6282 Tiso gene 10753 Tiso gene 608
3.1.26.4-RXN	Ribonuclease ORF	EC-3.1.26.4	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9453 Tiso gene 3410 Tiso gene 9459 Tiso gene 16584 Tiso gene 10743
3.1.26.5-RXN	Oxidoreductase ORF	EC-3.1.26.5	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 14345 Tiso gene 14344 Tiso gene 10972 Tiso gene 3898 Tiso gene 10971	PWY0-1479
3.1.27.1-RXN	Uncharacterized protein ORF	EC-3.1.27.1	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 11979 Tiso gene 13100 Tiso gene 8896
3.1.27.9-RXN	ORF Trna intron catalytic cterminal subfamily protein	EC-4.6.1.16	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 3776 Tiso gene 5254 Tiso gene 10338	PWY-6689 PWY-7803
3.1.3.16-RXN	Formin domain containing protein Formin-like protein 14 Protein phosphatase 1 ORF Serine threonine-protein phosphatase Serine threonine protein phosphatase 2a Serine threonine-phosphatase Protein phosphatase Dual specificity phosphatase Protein phosphatase 2c	EC-3.1.3.16	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 452 Tiso gene 2190 Tiso gene 7036 Tiso gene 3751 Tiso gene 15176 Tiso gene 17314 Tiso gene 5305 Tiso gene 1395 Tiso gene 10912 Tiso gene 7035 Tiso gene 2578 Tiso gene 15559 Tiso gene 13371 Tiso gene 18472 Tiso gene 19603 Tiso gene 16524 Tiso gene 15788 Tiso gene 16525 Tiso gene 20309 Tiso gene 4137 Tiso gene 12379 Tiso gene 4164 Tiso gene 2034 Tiso gene 11870 Tiso gene 453 Tiso gene 18502 Tiso gene 12989 Tiso gene 1840
3.1.3.46-RXN		EC-3.1.3.46	Orthology Annotation	Pantograph Pathwaytools	Orthology-creinhardtii Orthology-athaliana Annotation-experimental annotation Annotation-in-silico annotation	Tiso gene 15398 Tiso gene 2100 Tiso gene 893 Tiso gene 892	PWY66-423
3.1.3.56-RXN	Inositol polyphosphate 5phosphatase	EC-3.1.3.56	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 6030	PWY-6363
3.1.3.57-RXN		EC-3.1.3.57	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation	Tiso gene 12601	PWY-6363
3.1.3.62-RXN		EC-3.1.3.62	Annotation	Pathwaytools	Annotation-in-silico annotation		PWY-6364
3.1.3.66-RXN	Type i inositol- -bisphosphate -4 Inositol3	EC-3.1.3.66	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 4823 Tiso gene 3052 Tiso gene 4822	PWY-6368
3.1.4.1-RXN	Alkaline phosphatase d Alkaline phosphatase	EC-3.1.4.1	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 9372 Tiso gene 3271
3.1.4.11-RXN	Phospholipase c beta 4 1-phosphatidylinositol- -bisphosphate phosphodiesterase gamma-2	EC-3.1.4.11	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 7561 Tiso gene 12020 Tiso gene 12019	PWY-6367 PWY-6351 PWY-7039 LIPASYN-PWY
3.1.4.17-RXN	Iesterase family member Amino acid transporter	EC-3.1.4.17	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 9644 Tiso gene 1763 Tiso gene 12792
3.1.6.12-RXN	Arylsulfatase b	EC-3.1.6.12	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 15619
3.1.6.13-RXN	Iduronate-2-sulfatase	EC-3.1.6.13	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 18595
3.1.6.14-RXN	N-acetylglucosamine-6-sulfatase	EC-3.1.6.14	Annotation	Pathwaytools	Annotation-in-silico annotation	Tiso gene 18170
3.2.1.106-RXN	Mannosyl-oligosaccharide glucosidase	EC-3.2.1.106	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-esiliculosus	Tiso gene 12662
3.2.1.113-RXN	Probable alpha-mannosidase i mns5 Mannosyl-oligosaccharide -alpha-mannosidase mns2 Class member 1	EC-3.2.1.113	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-esiliculosus	Tiso gene 4788 Tiso gene 11681 Tiso gene 2719

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