Difference between revisions of "Tiso gene 11793"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_11793 == * right end position: ** 7522 * transcription direction: ** NEGATIVE * left end position: ** 5188 * centisome position: ** 68.9435...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] ==
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== Gene Tiso_gene_11793 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7522
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* common name:
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* transcription direction:
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** chorismate_synthase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.2.3.5 EC-4.2.3.5]
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** 5188
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* centisome position:
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** 68.94353   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.25-RXN]]
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** 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 5-enolpyruvoyl-shikimate 3-phosphate[c] '''=>''' 1 chorismate[c] '''+''' 1 phosphate[c]
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* Reaction: [[1.2.4.4-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[2.3.1.168-RXN]]
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* [[Tiso_gene_9630]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[2KETO-3METHYLVALERATE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[DHRT_2mbcoa]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[synechocystis]]
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* Reaction: [[DHRT_ibcoa]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-7719]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-5046]]
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* [[VALDEG-PWY]]
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* [[ILEUDEG-PWY]]
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* [[PWY-5108]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7522}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21020 21020]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5188}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
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{{#set: centisome position=68.94353    }}
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* UNIPROT:
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{{#set: reaction associated=1.2.1.25-RXN|1.2.4.4-RXN|2.3.1.168-RXN|2KETO-3METHYLVALERATE-RXN|DHRT_2mbcoa|DHRT_ibcoa|RXN-7719}}
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** [http://www.uniprot.org/uniprot/P27793 P27793]
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{{#set: pathway associated=PWY-5046|VALDEG-PWY|ILEUDEG-PWY|PWY-5108}}
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** [http://www.uniprot.org/uniprot/P23353 P23353]
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** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
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** [http://www.uniprot.org/uniprot/Q58575 Q58575]
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** [http://www.uniprot.org/uniprot/P43875 P43875]
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** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
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** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
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** [http://www.uniprot.org/uniprot/P28777 P28777]
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** [http://www.uniprot.org/uniprot/Q42885 Q42885]
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** [http://www.uniprot.org/uniprot/Q42884 Q42884]
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** [http://www.uniprot.org/uniprot/P16280 P16280]
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** [http://www.uniprot.org/uniprot/P12008 P12008]
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** [http://www.uniprot.org/uniprot/O74413 O74413]
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** [http://www.uniprot.org/uniprot/Q12640 Q12640]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=chorismate_synthase}}
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{{#set: ec number=EC-4.2.3.5}}
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{{#set: gene associated=Tiso_gene_9630}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:17, 21 March 2018

Gene Tiso_gene_11793

  • right end position:
    • 7522
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 5188
  • centisome position:
    • 68.94353
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11793&oldid=47521"