Difference between revisions of "Tiso gene 4816"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4816 == * right end position: ** 17531 * transcription direction: ** NEGATIVE * left end position: ** 14613 * centisome position: ** 82.934...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROOROTATE-DEHYDROGENASE-RXN DIHYDROOROTATE-DEHYDROGENASE-RXN] ==
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== Gene Tiso_gene_4816 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 17531
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.3.5.2 EC-1.3.5.2]
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** 14613
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* centisome position:
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** 82.934166   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENYL-KIN-RXN]]
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** 1 [[DI-H-OROTATE]][c] '''+''' 1 [[ETR-Quinones]][c] '''=>''' 1 [[OROTATE]][c] '''+''' 1 [[ETR-Quinols]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[GLUC1PURIDYLTRANS-RXN]]
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** 1 (S)-dihydroorotate[c] '''+''' 1 an electron-transfer quinone[c] '''=>''' 1 orotate[c] '''+''' 1 an electron-transfer quinol[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[PGCM]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PGMTh]]
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* [[Tiso_gene_5280]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[PHOSMANMUT-RXN]]
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* [[Tiso_gene_4735]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[PHOSPHOGLUCMUT-RXN]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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== Pathways ==
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*** Assignment: ec-number
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** Source: [[annotation-experimental_annotation]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN-14456]]
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* [[orthology]]:
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]:
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** Source: [[orthology-creinhardtii]]
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*** [[esiliculosus]]
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* Reaction: [[RXN-16997]]
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* [[annotation]]:
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** Source: [[annotation-in-silico_annotation]]
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** [[pathwaytools]]:
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*** Assignment: ec-number
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*** [[in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16998]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3801]]
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* [[PWY-7817]]
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* [[PWY-5659]]
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* [[PWY-2723]]
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* [[GLYCOGENSYNTH-PWY]]
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* [[PWY-5384]]
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* [[PWY-7343]]
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* [[PWY-7456]]
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* [[PWY-6527]]
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* [[PWY-5661]]
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* [[PWY-622]]
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* [[PWY-6317]]
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* [[PWY66-422]]
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* [[PWY-5941]]
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* [[PWY-5940]]
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* [[PWY-7238]]
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* [[PWY-882]]
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* [[GLYCOCAT-PWY]]
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* [[PWY-7219]]
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* [[PWY-7586]]
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* [[PWY-6731]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY-6737]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=17531}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18073 18073]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=14613}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01868 R01868]
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{{#set: centisome position=82.934166    }}
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* UNIPROT:
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{{#set: reaction associated=ADENYL-KIN-RXN|GLUC1PURIDYLTRANS-RXN|PGCM|PGMTh|PHOSMANMUT-RXN|PHOSPHOGLUCMUT-RXN|RXN-14456|RXN-16997|RXN-16998}}
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** [http://www.uniprot.org/uniprot/O76140 O76140]
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{{#set: pathway associated=PWY-3801|PWY-7817|PWY-5659|PWY-2723|GLYCOGENSYNTH-PWY|PWY-5384|PWY-7343|PWY-7456|PWY-6527|PWY-5661|PWY-622|PWY-6317|PWY66-422|PWY-5941|PWY-5940|PWY-7238|PWY-882|GLYCOCAT-PWY|PWY-7219|PWY-7586|PWY-6731|GLUCOSE1PMETAB-PWY|PWY-6737}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.3.5.2}}
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{{#set: gene associated=Tiso_gene_5280|Tiso_gene_4735}}
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{{#set: in pathway=PWY-5686}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 21:21, 21 March 2018

Gene Tiso_gene_4816

  • right end position:
    • 17531
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 14613
  • centisome position:
    • 82.934166
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4816&oldid=48009"