Difference between revisions of "UROGENIIISYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidylate_kinase * ec n...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** uropor...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thymidylate_kinase
+
** ORF
 +
** uroporphyrinogen_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.12 EC-2.7.4.12]
+
** [http://enzyme.expasy.org/EC/4.2.1.75 EC-4.2.1.75]
−
** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
+
−
** [http://enzyme.expasy.org/EC/2.7.4.9 EC-2.7.4.9]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[TMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
+
** 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 dTMP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 dTDP[c]
+
** 1 preuroporphyrinogen[c] '''=>''' 1 uroporphyrinogen-III[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3755]]
+
* Gene: [[Tiso_gene_11630]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_18827]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-creinhardtii]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13517 13517]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
+
** [http://www.uniprot.org/uniprot/P10746 P10746]
−
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
+
** [http://www.uniprot.org/uniprot/P51163 P51163]
−
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
+
** [http://www.uniprot.org/uniprot/P21248 P21248]
−
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
+
** [http://www.uniprot.org/uniprot/Q58401 Q58401]
−
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
+
** [http://www.uniprot.org/uniprot/P09126 P09126]
−
** [http://www.uniprot.org/uniprot/P33803 P33803]
+
** [http://www.uniprot.org/uniprot/Q59294 Q59294]
−
** [http://www.uniprot.org/uniprot/P42490 P42490]
+
−
** [http://www.uniprot.org/uniprot/P00572 P00572]
+
−
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
+
−
** [http://www.uniprot.org/uniprot/P68693 P68693]
+
−
** [http://www.uniprot.org/uniprot/P23919 P23919]
+
−
** [http://www.uniprot.org/uniprot/P36590 P36590]
+
−
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
+
−
** [http://www.uniprot.org/uniprot/O81650 O81650]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidylate_kinase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-2.7.4.12}}
+
{{#set: common name=uroporphyrinogen_synthase}}
−
{{#set: ec number=EC-2.7.4.13}}
+
{{#set: ec number=EC-4.2.1.75}}
−
{{#set: ec number=EC-2.7.4.9}}
+
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_18827}}
−
{{#set: gene associated=Tiso_gene_3755}}
+
{{#set: in pathway=PWY-5189|PWY-5188}}
−
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=primary_network}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:13, 21 March 2018

Reaction UROGENIIISYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • uroporphyrinogen_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5189, tetrapyrrole biosynthesis II (from glycine): PWY-5189
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5188, tetrapyrrole biosynthesis I (from glutamate): PWY-5188
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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