Difference between revisions of "PWY66-398"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.1.64-RXN 3.1.1.64-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans-retinyl-pal...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.1.64-RXN 3.1.1.64-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* common name:
 
* common name:
−
** all-trans-retinyl-palmitate hydrolase
+
** TCA cycle III (animals)
−
** Carboxylesterase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** tricarboxylic acid cycle
 +
** citric acid cycle
 +
** Szent-Gyorgyi-Krebs cycle
 +
** Krebs cycle
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''11''' reactions found over '''11''' reactions in the full pathway
−
** 1 [[WATER]][c] '''+''' 1 [[CHOCOLA_A]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-13524]][c] '''+''' 1 [[PALMITATE]][c]
+
* [[2OXOGLUTDECARB-RXN]]
−
* With common name(s):
+
** 5 associated gene(s):
−
** 1 H2O[c] '''+''' 1 all-trans-retinyl palmitate[c] '''=>''' 1 H+[c] '''+''' 1 all-trans-retinol[c] '''+''' 1 palmitate[c]
+
*** [[CHC_T00010287001_1]]
−
 
+
*** [[CHC_T00008312001]]
−
== Genes associated with this reaction  ==
+
*** [[CHC_T00008441001]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[CHC_T00008441001_1]]
−
* [[CHC_T00008784001]]
+
*** [[CHC_T00008312001_1]]
−
** ORIGINAL_GENOME
+
** 3 reconstruction source(s) associated:
−
***AUTOMATED-NAME-MATCH
+
*** [[annotation-original_genome]]
−
== Pathways  ==
+
*** [[orthology-ectocarpus_siliculosus]]
−
== Reconstruction information  ==
+
*** [[orthology-galdieria.sulphuraria]]
−
* [[annotation]]:
+
* [[ACONITATEDEHYDR-RXN]]
−
** [[pathwaytools]]:
+
** 3 associated gene(s):
−
*** [[original_genome]]
+
*** [[CHC_T00009087001_1]]
 +
*** [[CHC_T00008781001_1]]
 +
*** [[CHC_T00008781001]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[ACONITATEHYDR-RXN]]
 +
** 3 associated gene(s):
 +
*** [[CHC_T00009087001_1]]
 +
*** [[CHC_T00008781001]]
 +
*** [[CHC_T00008781001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[CITSYN-RXN]]
 +
** 1 associated gene(s):
 +
*** [[CHC_T00007817001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[FUMHYDR-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00008951001_1]]
 +
*** [[CHC_T00008951001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[ISOCITRATE-DEHYDROGENASE-NAD+-RXN]]
 +
** 6 associated gene(s):
 +
*** [[CHC_T00008852001_1]]
 +
*** [[CHC_T00008852001]]
 +
*** [[CHC_T00009162001_1]]
 +
*** [[CHC_T00009293001]]
 +
*** [[CHC_T00009293001_1]]
 +
*** [[CHC_T00009162001]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[MALATE-DEH-RXN]]
 +
** 6 associated gene(s):
 +
*** [[CHC_T00008733001]]
 +
*** [[CHC_T00009350001_1]]
 +
*** [[CHC_T00009173001_1]]
 +
*** [[CHC_T00009292001_1]]
 +
*** [[CHC_T00008733001_1]]
 +
*** [[CHC_T00008600001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[RXN0-1147]]
 +
** 6 associated gene(s):
 +
*** [[CHC_T00010287001_1]]
 +
*** [[CHC_T00010023001_1]]
 +
*** [[CHC_T00008312001_1]]
 +
*** [[CHC_T00008312001]]
 +
*** [[CHC_T00008441001_1]]
 +
*** [[CHC_T00008441001]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[SUCCCOASYN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00009212001_1]]
 +
*** [[CHC_T00008602001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
 +
** 1 associated gene(s):
 +
*** [[CHC_T00009212001_1]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 +
** 6 associated gene(s):
 +
*** [[CHC_T00007584001_1]]
 +
*** [[CHC_T00008943001_1]]
 +
*** [[CHC_T00007286001_1]]
 +
*** [[CHC_T00008943001]]
 +
*** [[CHC_T00006990001_1]]
 +
*** [[CHC_T00001817001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
*** [[orthology-galdieria.sulphuraria]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-33208}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13933 13933]
+
{{#set: common name=TCA cycle III (animals)}}
−
* LIGAND-RXN:
+
{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02368 R02368]
+
{{#set: reaction found=11}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: total reaction=11}}
−
{{#set: common name=all-trans-retinyl-palmitate hydrolase}}
+
{{#set: completion rate=100.0}}
−
{{#set: common name=Carboxylesterase}}
+
−
{{#set: ec number=EC-3.1.1.1}}
+
−
{{#set: gene associated=CHC_T00008784001}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 17:11, 23 May 2018

Pathway PWY66-398

  • taxonomic range:
  • common name:
    • TCA cycle III (animals)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

11 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY66-398&oldid=16426"