Difference between revisions of "Main Page"
From metabolic_network
(Created page with "== GEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Output...") |
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** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
| − | * Send the filled form(s) to: | + | * Send the filled form(s) to: gabriel.markov@sb-roscoff.fr |
Latest revision as of 14:46, 30 October 2018
GEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of ' results to a Genome scale Model containing 2024 reactions, 2196 metabolites, 2006 genes and 1108 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 595 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template GALDIERIA.SULPHURARIA creation of a metabolic network containing: 1361 reactions
- From template ARABIDOPSIS_THALIANA creation of a metabolic network containing: 383 reactions
- From template ECTOCARPUS_SILICULOSUS creation of a metabolic network containing: 1161 reactions
- Tool: Pantograph
- Based on expertise:
- 76 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 146 reaction(s) added
- Tool: meneco
