Difference between revisions of "UBIQUITIN--PROTEIN-LIGASE-RXN"

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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10919 RXN-10919] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ubiquitin-activating enzyme E1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
+
** [http://enzyme.expasy.org/EC/6.2.1.45 EC-6.2.1.45]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[SINAPATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[SINAPOYL-COA]][c]
+
** 1 [[Ubiquitin-C-Terminal-Glycine]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c] '''=>''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 sinapate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 sinapoyl-CoA[c]
+
** 1 a [ubiquitin] C-terminal glycine[c] '''+''' 1 ATP[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008472001_1]]
+
* Gene: [[CHC_T00002999001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[CHC_T00008160001_1]]
+
* Gene: [[CHC_T00003204001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00010007001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00000387001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006427001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00002169001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00004379001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00002451001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00010352001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009358001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006980001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008502001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006277001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00005498001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00004399001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00007651001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00000123001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00007701001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00009466001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008644001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00003966001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00002791001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00005531001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008443001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00008828001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00006794001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00002417001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00004279001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00004299001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00009159001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00004841001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00010007001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00005520001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008644001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00010346001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00003230001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00005234001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_T00010031001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[a.taliana]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02221 R02221]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03876 R03876]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22314 P22314]
 +
** [http://www.uniprot.org/uniprot/P49459 P49459]
 +
** [http://www.uniprot.org/uniprot/P62256 P62256]
 +
** [http://www.uniprot.org/uniprot/P63146 P63146]
 +
** [http://www.uniprot.org/uniprot/P28263 P28263]
 +
** [http://www.uniprot.org/uniprot/Q02053 Q02053]
 +
** [http://www.uniprot.org/uniprot/P62257 P62257]
 +
** [http://www.uniprot.org/uniprot/P61088 P61088]
 +
** [http://www.uniprot.org/uniprot/P63279 P63279]
 +
** [http://www.uniprot.org/uniprot/P19812 P19812]
 +
** [http://www.uniprot.org/uniprot/P21734 P21734]
 +
** [http://www.uniprot.org/uniprot/P25869 P25869]
 +
** [http://www.uniprot.org/uniprot/P31254 P31254]
 +
** [http://www.uniprot.org/uniprot/P15731 P15731]
 +
** [http://www.uniprot.org/uniprot/P15732 P15732]
 +
** [http://www.uniprot.org/uniprot/P29340 P29340]
 +
** [http://www.uniprot.org/uniprot/P35133 P35133]
 +
** [http://www.uniprot.org/uniprot/P35134 P35134]
 +
** [http://www.uniprot.org/uniprot/P35132 P35132]
 +
** [http://www.uniprot.org/uniprot/P33296 P33296]
 +
** [http://www.uniprot.org/uniprot/P22515 P22515]
 +
** [http://www.uniprot.org/uniprot/P39940 P39940]
 +
** [http://www.uniprot.org/uniprot/P42748 P42748]
 +
** [http://www.uniprot.org/uniprot/P42750 P42750]
 +
** [http://www.uniprot.org/uniprot/P42749 P42749]
 +
** [http://www.uniprot.org/uniprot/P42747 P42747]
 +
** [http://www.uniprot.org/uniprot/P50623 P50623]
 +
** [http://www.uniprot.org/uniprot/Q42973 Q42973]
 +
** [http://www.uniprot.org/uniprot/P40984 P40984]
 +
** [http://www.uniprot.org/uniprot/Q92462 Q92462]
 +
** [http://www.uniprot.org/uniprot/Q42540 Q42540]
 +
** [http://www.uniprot.org/uniprot/P93028 P93028]
 +
** [http://www.uniprot.org/uniprot/P93393 P93393]
 +
** [http://www.uniprot.org/uniprot/P31252 P31252]
 +
** [http://www.uniprot.org/uniprot/P52486 P52486]
 +
** [http://www.uniprot.org/uniprot/Q9YGM6 Q9YGM6]
 +
** [http://www.uniprot.org/uniprot/O42646 O42646]
 +
** [http://www.uniprot.org/uniprot/O15979 O15979]
 +
** [http://www.uniprot.org/uniprot/P23566 P23566]
 +
** [http://www.uniprot.org/uniprot/Q96PU5 Q96PU5]
 +
** [http://www.uniprot.org/uniprot/P27949 P27949]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-6.2.1.12}}
+
{{#set: common name=ubiquitin-activating enzyme E1}}
−
{{#set: gene associated=CHC_T00008472001_1|CHC_T00008160001_1}}
+
{{#set: ec number=EC-6.2.1.45}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=CHC_T00002999001_1|CHC_T00003204001_1|CHC_T00010007001|CHC_T00000387001_1|CHC_T00006427001_1|CHC_T00002169001_1|CHC_T00004379001_1|CHC_T00002451001_1|CHC_T00010352001_1|CHC_T00009358001_1|CHC_T00006980001_1|CHC_T00008502001_1|CHC_T00006277001_1|CHC_T00005498001_1|CHC_T00004399001_1|CHC_T00007651001_1|CHC_T00000123001_1|CHC_T00007701001_1|CHC_T00009466001_1|CHC_T00008644001|CHC_T00003966001_1|CHC_T00002791001_1|CHC_T00005531001_1|CHC_T00008443001_1|CHC_T00008828001_1|CHC_T00006794001_1|CHC_T00002417001_1|CHC_T00004279001_1|CHC_T00004299001_1|CHC_T00009159001_1|CHC_T00004841001_1|CHC_T00010007001_1|CHC_T00005520001_1|CHC_T00008644001_1|CHC_T00010346001_1|CHC_T00003230001_1|CHC_T00005234001_1|CHC_T00010031001_1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-7511}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=a.taliana}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:28, 9 January 2019

Reaction UBIQUITIN--PROTEIN-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ubiquitin-activating enzyme E1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7511, protein ubiquitylation: PWY-7511
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=UBIQUITIN--PROTEIN-LIGASE-RXN&oldid=23133"