Difference between revisions of "Apo-3-methylcrotonoyl-CoA-carbon-dioxide"

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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
 
Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
  
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The automatic reconstruction of ''Chondrus crispus'' results to a Genome scale [[MEDIA:model.xml|Model]] containing NB_RXN reactions, NB_CPD metabolites, NB_GENE genes and NB_PWY pathways. This GeM was obtained based on the following sources:
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The automatic reconstruction of ''Chondrus crispus'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1943 reactions, 2053 metabolites, 1701 genes and 1035 pathways. This GeM was obtained based on the following sources:
 
* Based on annotation data:
 
* Based on annotation data:
 
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
 
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]

Revision as of 12:10, 31 January 2018

GEM description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Chondrus crispus results to a Genome scale Model containing 1943 reactions, 2053 metabolites, 1701 genes and 1035 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Tool: Pathway tools
      • Creation of a metabolic network containing 773 reactions
  • Based on orthology data:
    • Tool: Pantograph
      • From template GALDIERIA.SULPHURARIA creation of a metabolic network containing: 1361 reactions
      • From template A.TALIANA creation of a metabolic network containing: 383 reactions
  • Based on expertise:
      • 73 reaction(s) added
  • Based on gap-filling:
    • Tool: meneco
      • 151 reaction(s) added

Venn.png

Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: gabriel.markov@sb-roscoff.fr
  • For more information about this project, please contact Gabriel Markov (Station Biologique de Roscoff).
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