Difference between revisions of "UBIQUITIN--PROTEIN-LIGASE-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10919 RXN-10919] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UBIQUITIN--PROTEIN-LIGASE-RXN UBIQUITIN--PROTEIN-LIGASE-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
+ | * common name: | ||
+ | ** ubiquitin-activating enzyme E1 | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/6.2.1. | + | ** [http://enzyme.expasy.org/EC/6.2.1.45 EC-6.2.1.45] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[Ubiquitin-C-Terminal-Glycine]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c] '''=>''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 a [ubiquitin] C-terminal glycine[c] '''+''' 1 ATP[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[CHC_T00002999001_1]] |
− | ** [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
− | * [[ | + | * Gene: [[CHC_T00003204001_1]] |
− | ** [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00010007001]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00000387001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00006427001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00002169001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00004379001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00002451001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00010352001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00009358001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00006980001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00008502001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00006277001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00005498001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00004399001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00007651001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00000123001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00007701001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00009466001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00008644001]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00003966001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00002791001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00005531001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00008443001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00008828001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00006794001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00002417001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00004279001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00004299001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00009159001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00004841001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00010007001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00005520001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00008644001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00010346001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00003230001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00005234001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00010031001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
+ | * [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03876 R03876] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P22314 P22314] | ||
+ | ** [http://www.uniprot.org/uniprot/P49459 P49459] | ||
+ | ** [http://www.uniprot.org/uniprot/P62256 P62256] | ||
+ | ** [http://www.uniprot.org/uniprot/P63146 P63146] | ||
+ | ** [http://www.uniprot.org/uniprot/P28263 P28263] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02053 Q02053] | ||
+ | ** [http://www.uniprot.org/uniprot/P62257 P62257] | ||
+ | ** [http://www.uniprot.org/uniprot/P61088 P61088] | ||
+ | ** [http://www.uniprot.org/uniprot/P63279 P63279] | ||
+ | ** [http://www.uniprot.org/uniprot/P19812 P19812] | ||
+ | ** [http://www.uniprot.org/uniprot/P21734 P21734] | ||
+ | ** [http://www.uniprot.org/uniprot/P25869 P25869] | ||
+ | ** [http://www.uniprot.org/uniprot/P31254 P31254] | ||
+ | ** [http://www.uniprot.org/uniprot/P15731 P15731] | ||
+ | ** [http://www.uniprot.org/uniprot/P15732 P15732] | ||
+ | ** [http://www.uniprot.org/uniprot/P29340 P29340] | ||
+ | ** [http://www.uniprot.org/uniprot/P35133 P35133] | ||
+ | ** [http://www.uniprot.org/uniprot/P35134 P35134] | ||
+ | ** [http://www.uniprot.org/uniprot/P35132 P35132] | ||
+ | ** [http://www.uniprot.org/uniprot/P33296 P33296] | ||
+ | ** [http://www.uniprot.org/uniprot/P22515 P22515] | ||
+ | ** [http://www.uniprot.org/uniprot/P39940 P39940] | ||
+ | ** [http://www.uniprot.org/uniprot/P42748 P42748] | ||
+ | ** [http://www.uniprot.org/uniprot/P42750 P42750] | ||
+ | ** [http://www.uniprot.org/uniprot/P42749 P42749] | ||
+ | ** [http://www.uniprot.org/uniprot/P42747 P42747] | ||
+ | ** [http://www.uniprot.org/uniprot/P50623 P50623] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42973 Q42973] | ||
+ | ** [http://www.uniprot.org/uniprot/P40984 P40984] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92462 Q92462] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42540 Q42540] | ||
+ | ** [http://www.uniprot.org/uniprot/P93028 P93028] | ||
+ | ** [http://www.uniprot.org/uniprot/P93393 P93393] | ||
+ | ** [http://www.uniprot.org/uniprot/P31252 P31252] | ||
+ | ** [http://www.uniprot.org/uniprot/P52486 P52486] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YGM6 Q9YGM6] | ||
+ | ** [http://www.uniprot.org/uniprot/O42646 O42646] | ||
+ | ** [http://www.uniprot.org/uniprot/O15979 O15979] | ||
+ | ** [http://www.uniprot.org/uniprot/P23566 P23566] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96PU5 Q96PU5] | ||
+ | ** [http://www.uniprot.org/uniprot/P27949 P27949] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: ec number=EC-6.2.1. | + | {{#set: common name=ubiquitin-activating enzyme E1}} |
− | {{#set: gene associated= | + | {{#set: ec number=EC-6.2.1.45}} |
− | {{#set: in pathway=}} | + | {{#set: gene associated=CHC_T00002999001_1|CHC_T00003204001_1|CHC_T00010007001|CHC_T00000387001_1|CHC_T00006427001_1|CHC_T00002169001_1|CHC_T00004379001_1|CHC_T00002451001_1|CHC_T00010352001_1|CHC_T00009358001_1|CHC_T00006980001_1|CHC_T00008502001_1|CHC_T00006277001_1|CHC_T00005498001_1|CHC_T00004399001_1|CHC_T00007651001_1|CHC_T00000123001_1|CHC_T00007701001_1|CHC_T00009466001_1|CHC_T00008644001|CHC_T00003966001_1|CHC_T00002791001_1|CHC_T00005531001_1|CHC_T00008443001_1|CHC_T00008828001_1|CHC_T00006794001_1|CHC_T00002417001_1|CHC_T00004279001_1|CHC_T00004299001_1|CHC_T00009159001_1|CHC_T00004841001_1|CHC_T00010007001_1|CHC_T00005520001_1|CHC_T00008644001_1|CHC_T00010346001_1|CHC_T00003230001_1|CHC_T00005234001_1|CHC_T00010031001_1}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: in pathway=PWY-7511}} |
− | {{#set: reconstruction | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction | + | {{#set: reconstruction source=annotation-original_genome|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}} |
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 16:37, 23 May 2018
Contents
Reaction UBIQUITIN--PROTEIN-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ubiquitin-activating enzyme E1
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 Ubiquitin-C-Terminal-Glycine[c] + 1 ATP[c] + 1 Ubiquitin-activating-protein-E1-L-cys[c] => 1 S-ubiquitinyl-UAP-E1-L-cysteine[c] + 1 AMP[c] + 1 PPI[c]
- With common name(s):
- 1 a [ubiquitin] C-terminal glycine[c] + 1 ATP[c] + 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c] => 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] + 1 AMP[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00002999001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00003204001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00010007001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00000387001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00006427001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00002169001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00004379001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00002451001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00010352001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00009358001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00006980001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00008502001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00006277001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00005498001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00004399001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00007651001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00000123001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00007701001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00009466001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00008644001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00003966001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00002791001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00005531001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00008443001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00008828001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00006794001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00002417001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00004279001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00004299001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00009159001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00004841001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00010007001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00005520001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008644001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00010346001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00003230001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00005234001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00010031001_1
- Source: orthology-ectocarpus_siliculosus
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
- LIGAND-RXN:
- UNIPROT: