Main Page

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of ' results to a Genome scale Model containing 2024 reactions, 2196 metabolites, 2006 genes and 1108 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Tool: Pathway tools
    • Creation of a metabolic network containing 595 reactions
• Based on orthology data:
  • Tool: Pantograph
    • From template GALDIERIA.SULPHURARIA creation of a metabolic network containing: 1361 reactions
    • From template ARABIDOPSIS_THALIANA creation of a metabolic network containing: 383 reactions
    • From template ECTOCARPUS_SILICULOSUS creation of a metabolic network containing: 1161 reactions
• Based on expertise:
  • • 76 reaction(s) added
• Based on gap-filling:
  • Tool: meneco
    • 146 reaction(s) added

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: CONTACT_MAIL