Difference between revisions of "PWY-922"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** long chain acyl-coA synthetas...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** long chain acyl-coA synthetase
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** mevalonate pathway I
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** long chain acyl-CoA synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
 +
** isoprenoid pathway
 +
** MVA pathway
 +
** isopentenyl diphosphate biosynthesis
 +
** dimethylallyl diphosphate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''7''' reactions in the full pathway
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** 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Long-Chain-Acyl-CoAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[1.1.1.34-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 a long-chain fatty acid[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''=>''' 1 a long-chain acyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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*** [[Ec-03_000570]]
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*** [[Ec-03_000580]]
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== Genes associated with this reaction  ==
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*** [[Ec-08_002990]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Ec-27_005710]]
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* [[Ec-01_001560]]
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** 2 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-aragem]]
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* [[Ec-02_006430]]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** ESILICULOSUS_GENOME
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** 3 associated gene(s):
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***AUTOMATED-NAME-MATCH
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*** [[Ec-26_003940]]
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* [[Ec-12_008720]]
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*** [[Ec-24_000870]]
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** ESILICULOSUS_GENOME
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*** [[Ec-22_002850]]
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***AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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* [[Ec-03_003710]]
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*** [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** [[orthology-aragem]]
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***AUTOMATED-NAME-MATCH
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* [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
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== Pathways  ==
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** 1 associated gene(s):
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* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
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*** [[Ec-21_001440]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
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*** [[annotation-esiliculosus_genome]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-aragem]]
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* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
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* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
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*** [[Ec-19_002030]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-21_004360]]
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* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
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** 2 reconstruction source(s) associated:
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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*** [[orthology-aragem]]
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* Category: [[annotation]]
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* [[IPPISOM-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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** 2 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Ec-11_001030]]
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*** [[Ec-18_002690]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[MEVALONATE-KINASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-26_004370]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PHOSPHOMEVALONATE-KINASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-25_002910]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* PIR:
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* ARACYC:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-922 PWY-922]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
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{{#set: taxonomic range=TAX-2157}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
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{{#set: taxonomic range=TAX-33208}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
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{{#set: taxonomic range=TAX-4751}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
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{{#set: taxonomic range=TAX-2}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
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{{#set: taxonomic range=TAX-33090}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
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{{#set: common name=mevalonate pathway I}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
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{{#set: common name=isoprenoid pathway|MVA pathway|isopentenyl diphosphate biosynthesis|dimethylallyl diphosphate biosynthesis}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
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{{#set: reaction found=7}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
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{{#set: total reaction=7}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
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{{#set: completion rate=100.0}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
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−
* LIGAND-RXN:
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−
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
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−
* UNIPROT:
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** [http://www.uniprot.org/uniprot/O60135 O60135]
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
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−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
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−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
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−
** [http://www.uniprot.org/uniprot/O15840 O15840]
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−
** [http://www.uniprot.org/uniprot/O81614 O81614]
+
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** [http://www.uniprot.org/uniprot/P73004 P73004]
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** [http://www.uniprot.org/uniprot/P47912 P47912]
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−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
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** [http://www.uniprot.org/uniprot/P69452 P69452]
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** [http://www.uniprot.org/uniprot/P69451 P69451]
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
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** [http://www.uniprot.org/uniprot/P30624 P30624]
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** [http://www.uniprot.org/uniprot/P33124 P33124]
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** [http://www.uniprot.org/uniprot/P33121 P33121]
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−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
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−
** [http://www.uniprot.org/uniprot/O51539 O51539]
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−
** [http://www.uniprot.org/uniprot/O30039 O30039]
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** [http://www.uniprot.org/uniprot/P44446 P44446]
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
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−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
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** [http://www.uniprot.org/uniprot/P94547 P94547]
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
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** [http://www.uniprot.org/uniprot/O83181 O83181]
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
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** [http://www.uniprot.org/uniprot/P39002 P39002]
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−
** [http://www.uniprot.org/uniprot/O51162 O51162]
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** [http://www.uniprot.org/uniprot/P39518 P39518]
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−
** [http://www.uniprot.org/uniprot/P18163 P18163]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=long chain acyl-coA synthetase}}
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{{#set: common name=long chain acyl-CoA synthetase}}
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−
{{#set: ec number=EC-6.2.1.3}}
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−
{{#set: gene associated=Ec-01_001560|Ec-02_006430|Ec-12_008720|Ec-03_003710}}
+
−
{{#set: in pathway=PWY-5143|PWY-6803|PWY-6873|PWY-7033|PWY-5885}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:30, 21 March 2018

Pathway PWY-922

  • taxonomic range:
  • common name:
    • mevalonate pathway I
  • Synonym(s):
    • isoprenoid pathway
    • MVA pathway
    • isopentenyl diphosphate biosynthesis
    • dimethylallyl diphosphate biosynthesis

Reaction(s) found

7 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-922&oldid=27416"