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Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus subulatus strain BFT results to a Genome scale Model containing 2074 reactions, 2173 metabolites, 2445 genes and 1083 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Tool: Pathway tools
    • Creation of a metabolic network containing 1779 reactions
• Based on orthology data:
  • Tool: Pantograph
    • From template A.THALIANA.ARAGEM creation of a metabolic network containing: 421 reactions
• Based on expertise:
  • • 103 reaction(s) added
• Based on gap-filling:
  • Tool: meneco
    • 50 reaction(s) added

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme@inria.fr