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SubuBftGEM description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ectocarpus subulatus strain BFT results to a Genome scale Model containing 2074 reactions, 2173 metabolites, 2445 genes and 1083 pathways. This GeM was obtained based on the following sources:

  • Based on annotation data:
    • Tool: Pathway tools
      • Creation of a metabolic network containing 1779 reactions
  • Based on orthology data:
    • Tool: Pantograph
      • From template A.THALIANA.ARAGEM creation of a metabolic network containing: 421 reactions
  • Based on expertise:
      • 103 reaction(s) added
  • Based on gap-filling:
    • Tool: meneco
      • 50 reaction(s) added


Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: