Difference between revisions of "Main Page"
From metabolic_network
Line 1: | Line 1: | ||
− | == | + | == SubuBftGEM description == |
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | ||
Model summary: [[MEDIA:summary.txt|summary]] | Model summary: [[MEDIA:summary.txt|summary]] |
Revision as of 16:04, 16 February 2018
SubuBftGEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of Ectocarpus subulatus strain BFT results to a Genome scale Model containing 2074 reactions, 2173 metabolites, 2445 genes and 1083 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 1779 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template A.TALIANA.ARAGEM creation of a metabolic network containing: 421 reactions
- Tool: Pantograph
- Based on expertise:
- 103 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 50 reaction(s) added
- Tool: meneco