Difference between revisions of "Tiso gene 6884"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Gene == Gene Tiso_gene_6884 == * right end position: ** 9260 * transcription direction: ** POSITIVE * left end position: ** 7378 * centisome position: ** 62.93074...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] ==
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== Gene Tiso_gene_6884 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9260
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* common name:
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* transcription direction:
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** nucleoredoxin
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** POSITIVE
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** ORF
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* left end position:
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** thioredoxin_reductase_tr1
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** 7378
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** thioredoxin_reductase
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* centisome position:
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* ec number:
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** 62.93074   
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** [http://enzyme.expasy.org/EC/1.8.1.9 EC-1.8.1.9]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[Red-Thioredoxin]][c] '''+''' 1 [[NADP]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 H+[c] '''+''' 1 an oxidized thioredoxin[c] '''+''' 1 NADPH[c] '''=>''' 1 a reduced thioredoxin[c] '''+''' 1 NADP+[c]
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* Reaction: [[4.2.1.58-RXN]]
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** Source: [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[4.2.1.59-RXN]]
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* [[Tiso_gene_16927]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***AUTOMATED-NAME-MATCH
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* Reaction: [[4.2.1.61-RXN]]
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* [[Tiso_gene_475]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-10061]]
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* [[Tiso_gene_15704]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-10656]]
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* [[Tiso_gene_18783]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-10660]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[THIOREDOX-PWY]], thioredoxin pathway: [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOX-PWY THIOREDOX-PWY]
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* Reaction: [[RXN-11477]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* [[orthology]]:
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* Reaction: [[RXN-11481]]
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** [[pantograph]]:
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** Source: [[annotation-experimental_annotation]]
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*** [[esiliculosus]]
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*** Assignment: automated-name-match
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* [[manual]]:
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* Reaction: [[RXN-16619]]
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** [[primary_network]]
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** Source: [[annotation-experimental_annotation]]
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* [[annotation]]:
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*** Assignment: automated-name-match
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** [[pathwaytools]]:
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* Reaction: [[RXN-16623]]
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*** [[in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16627]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16631]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9520]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9533]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9537]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9557]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9634]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9655]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-2144]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-1084]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-220]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-320]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-363]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-517]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-7664]]
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* [[PWY-6282]]
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* [[PWY-5973]]
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* [[PWY-5989]]
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* [[PWY-5971]]
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* [[PWYG-321]]
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* [[PWY-7663]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY0-862]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9260}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7378}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
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{{#set: centisome position=62.93074    }}
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* UNIPROT:
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{{#set: reaction associated=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|RXN-10061|RXN-10656|RXN-10660|RXN-11477|RXN-11481|RXN-16619|RXN-16623|RXN-16627|RXN-16631|RXN-9520|RXN-9533|RXN-9537|RXN-9557|RXN-9634|RXN-9655|RXN0-2144|RXN1G-1084|RXN1G-220|RXN1G-320|RXN1G-363|RXN1G-517}}
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** [http://www.uniprot.org/uniprot/Q05741 Q05741]
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-7664|PWY-6282|PWY-5973|PWY-5989|PWY-5971|PWYG-321|PWY-7663|PWY-5994|PWY3O-355|PWY0-862}}
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** [http://www.uniprot.org/uniprot/P56431 P56431]
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** [http://www.uniprot.org/uniprot/O28718 O28718]
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** [http://www.uniprot.org/uniprot/P80880 P80880]
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** [http://www.uniprot.org/uniprot/P43496 P43496]
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** [http://www.uniprot.org/uniprot/P94284 P94284]
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** [http://www.uniprot.org/uniprot/O66790 O66790]
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** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
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** [http://www.uniprot.org/uniprot/P47348 P47348]
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** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
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** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
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** [http://www.uniprot.org/uniprot/O26804 O26804]
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** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
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** [http://www.uniprot.org/uniprot/P43788 P43788]
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** [http://www.uniprot.org/uniprot/Q58931 Q58931]
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** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
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** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
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** [http://www.uniprot.org/uniprot/P23160 P23160]
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** [http://www.uniprot.org/uniprot/P39916 P39916]
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** [http://www.uniprot.org/uniprot/Q39242 Q39242]
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** [http://www.uniprot.org/uniprot/Q39243 Q39243]
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** [http://www.uniprot.org/uniprot/P38816 P38816]
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** [http://www.uniprot.org/uniprot/Q25861 Q25861]
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** [http://www.uniprot.org/uniprot/P29509 P29509]
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** [http://www.uniprot.org/uniprot/P52213 P52213]
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** [http://www.uniprot.org/uniprot/Q16881 Q16881]
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** [http://www.uniprot.org/uniprot/P75531 P75531]
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** [http://www.uniprot.org/uniprot/P74746 P74746]
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** [http://www.uniprot.org/uniprot/P46843 P46843]
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** [http://www.uniprot.org/uniprot/O54535 O54535]
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** [http://www.uniprot.org/uniprot/Q39951 Q39951]
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** [http://www.uniprot.org/uniprot/Q92375 Q92375]
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** [http://www.uniprot.org/uniprot/P52215 P52215]
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** [http://www.uniprot.org/uniprot/P51978 P51978]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=nucleoredoxin}}
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{{#set: common name=ORF}}
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{{#set: common name=thioredoxin_reductase_tr1}}
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{{#set: common name=thioredoxin_reductase}}
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{{#set: ec number=EC-1.8.1.9}}
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{{#set: gene associated=Tiso_gene_16927|Tiso_gene_475|Tiso_gene_15704|Tiso_gene_18783}}
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{{#set: in pathway=THIOREDOX-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_6884

  • right end position:
    • 9260
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7378
  • centisome position:
    • 62.93074
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6884&oldid=48151"