Difference between revisions of "Tiso gene 6884"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-...")
(Created page with "Category:Gene == Gene Tiso_gene_6884 == * right end position: ** 9260 * transcription direction: ** POSITIVE * left end position: ** 7378 * centisome position: ** 62.93074...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-OXIDASE-RXN ACYL-COA-OXIDASE-RXN] ==
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== Gene Tiso_gene_6884 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9260
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* common name:
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* transcription direction:
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** acyl-coenzyme_a_oxidase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
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** 7378
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* centisome position:
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** 62.93074   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[ACYL-COA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 oxygen[c] '''+''' 1 an acyl-CoA[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 a trans-2-enoyl-CoA[c]
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* Reaction: [[4.2.1.58-RXN]]
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** Source: [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[4.2.1.59-RXN]]
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* [[Tiso_gene_18566]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[4.2.1.61-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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* Reaction: [[RXN-10061]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* Category: [[orthology]]
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* Reaction: [[RXN-10656]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: automated-name-match
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* Category: [[annotation]]
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* Reaction: [[RXN-10660]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-11477]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-11481]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16619]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16623]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16627]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16631]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9520]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9533]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9537]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9557]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9634]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9655]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-2144]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-1084]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-220]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-320]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-363]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN1G-517]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-7664]]
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* [[PWY-6282]]
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* [[PWY-5973]]
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* [[PWY-5989]]
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* [[PWY-5971]]
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* [[PWYG-321]]
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* [[PWY-7663]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY0-862]]
 
== External links  ==
 
== External links  ==
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* PIR:
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{{#set: right end position=9260}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
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{{#set: transcription direction=POSITIVE}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
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{{#set: left end position=7378}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
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{{#set: centisome position=62.93074    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
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{{#set: reaction associated=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|RXN-10061|RXN-10656|RXN-10660|RXN-11477|RXN-11481|RXN-16619|RXN-16623|RXN-16627|RXN-16631|RXN-9520|RXN-9533|RXN-9537|RXN-9557|RXN-9634|RXN-9655|RXN0-2144|RXN1G-1084|RXN1G-220|RXN1G-320|RXN1G-363|RXN1G-517}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-7664|PWY-6282|PWY-5973|PWY-5989|PWY-5971|PWYG-321|PWY-7663|PWY-5994|PWY3O-355|PWY0-862}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q15067 Q15067]
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** [http://www.uniprot.org/uniprot/Q00468 Q00468]
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** [http://www.uniprot.org/uniprot/P06598 P06598]
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** [http://www.uniprot.org/uniprot/P11356 P11356]
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** [http://www.uniprot.org/uniprot/P07872 P07872]
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** [http://www.uniprot.org/uniprot/P34355 P34355]
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** [http://www.uniprot.org/uniprot/P13711 P13711]
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** [http://www.uniprot.org/uniprot/O23977 O23977]
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** [http://www.uniprot.org/uniprot/O65201 O65201]
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** [http://www.uniprot.org/uniprot/O65202 O65202]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: ec number=EC-1.3.3.6}}
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{{#set: gene associated=Tiso_gene_18566}}
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{{#set: in pathway=PWY-7007}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_6884

  • right end position:
    • 9260
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7378
  • centisome position:
    • 62.93074
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6884&oldid=48151"