Difference between revisions of "RXN0-3542"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MERCAPYSTRANS-RXN MERCAPYSTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-mercaptop...")
(Created page with "Category:Gene == Gene Tiso_gene_6884 == * left end position: ** 7378 * transcription direction: ** POSITIVE * right end position: ** 9260 * centisome position: ** 62.93074...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MERCAPYSTRANS-RXN MERCAPYSTRANS-RXN] ==
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== Gene Tiso_gene_6884 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 7378
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* common name:
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* transcription direction:
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** 3-mercaptopyruvate_sulfurtransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.8.1.2 EC-2.8.1.2]
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** 9260
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* centisome position:
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** 62.93074   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
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** 1 [[3-MERCAPTO-PYRUVATE]][c] '''+''' 1 [[HCN]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[HSCN]][c] '''+''' 1 [[PYRUVATE]][c]
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** experimental_annotation
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* With common name(s):
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***automated-name-match
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** 1 3-mercaptopyruvate[c] '''+''' 1 hydrogen cyanide[c] '''=>''' 1 H+[c] '''+''' 1 thiocyanate[c] '''+''' 1 pyruvate[c]
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* [[4.2.1.58-RXN]]
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** experimental_annotation
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== Genes associated with this reaction  ==
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***automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* [[4.2.1.59-RXN]]
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* [[Tiso_gene_5838]]
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** experimental_annotation
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** IN-SILICO_ANNOTATION
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***automated-name-match
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***AUTOMATED-NAME-MATCH
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* [[4.2.1.61-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** experimental_annotation
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***AUTOMATED-NAME-MATCH
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***automated-name-match
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== Pathways ==
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* [[RXN-10061]]
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* [[PWY-5329]], L-cysteine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5329 PWY-5329]
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** experimental_annotation
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** '''2''' reactions found over '''2''' reactions in the full pathway
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***automated-name-match
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== Reconstruction information  ==
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* [[RXN-10656]]
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* [[annotation]]:
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** experimental_annotation
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** [[pathwaytools]]:
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***automated-name-match
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*** [[experimental_annotation]]
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* [[RXN-10660]]
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*** [[in-silico_annotation]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-11477]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-11481]]
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** experimental_annotation
 +
***automated-name-match
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* [[RXN-16619]]
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** experimental_annotation
 +
***automated-name-match
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* [[RXN-16623]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-16627]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-16631]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-9520]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-9533]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-9537]]
 +
** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-9557]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN-9634]]
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** experimental_annotation
 +
***automated-name-match
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* [[RXN-9655]]
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** experimental_annotation
 +
***automated-name-match
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* [[RXN0-2144]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN1G-1084]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN1G-220]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN1G-320]]
 +
** experimental_annotation
 +
***automated-name-match
 +
* [[RXN1G-363]]
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** experimental_annotation
 +
***automated-name-match
 +
* [[RXN1G-517]]
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** experimental_annotation
 +
***automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-7664]]
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* [[PWY-6282]]
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* [[PWY-5973]]
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* [[PWY-5989]]
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* [[PWY-5971]]
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* [[PWYG-321]]
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* [[PWY-7663]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY0-862]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=7378}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21740 21740]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=9260}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03106 R03106]
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{{#set: centisome position=62.93074    }}
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* UNIPROT:
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{{#set: reaction associated=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|RXN-10061|RXN-10656|RXN-10660|RXN-11477|RXN-11481|RXN-16619|RXN-16623|RXN-16627|RXN-16631|RXN-9520|RXN-9533|RXN-9537|RXN-9557|RXN-9634|RXN-9655|RXN0-2144|RXN1G-1084|RXN1G-220|RXN1G-320|RXN1G-363|RXN1G-517}}
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** [http://www.uniprot.org/uniprot/Q9USJ1 Q9USJ1]
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-7664|PWY-6282|PWY-5973|PWY-5989|PWY-5971|PWYG-321|PWY-7663|PWY-5994|PWY3O-355|PWY0-862}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=3-mercaptopyruvate_sulfurtransferase}}
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{{#set: ec number=EC-2.8.1.2}}
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{{#set: gene associated=Tiso_gene_5838}}
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{{#set: in pathway=PWY-5329}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 01:13, 19 March 2018

Gene Tiso_gene_6884

  • left end position:
    • 7378
  • transcription direction:
    • POSITIVE
  • right end position:
    • 9260
  • centisome position:
    • 62.93074
  • Synonym(s):

Reactions associated

  • 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN
    • experimental_annotation
      • automated-name-match
  • 4.2.1.58-RXN
    • experimental_annotation
      • automated-name-match
  • 4.2.1.59-RXN
    • experimental_annotation
      • automated-name-match
  • 4.2.1.61-RXN
    • experimental_annotation
      • automated-name-match
  • RXN-10061
    • experimental_annotation
      • automated-name-match
  • RXN-10656
    • experimental_annotation
      • automated-name-match
  • RXN-10660
    • experimental_annotation
      • automated-name-match
  • RXN-11477
    • experimental_annotation
      • automated-name-match
  • RXN-11481
    • experimental_annotation
      • automated-name-match
  • RXN-16619
    • experimental_annotation
      • automated-name-match
  • RXN-16623
    • experimental_annotation
      • automated-name-match
  • RXN-16627
    • experimental_annotation
      • automated-name-match
  • RXN-16631
    • experimental_annotation
      • automated-name-match
  • RXN-9520
    • experimental_annotation
      • automated-name-match
  • RXN-9533
    • experimental_annotation
      • automated-name-match
  • RXN-9537
    • experimental_annotation
      • automated-name-match
  • RXN-9557
    • experimental_annotation
      • automated-name-match
  • RXN-9634
    • experimental_annotation
      • automated-name-match
  • RXN-9655
    • experimental_annotation
      • automated-name-match
  • RXN0-2144
    • experimental_annotation
      • automated-name-match
  • RXN1G-1084
    • experimental_annotation
      • automated-name-match
  • RXN1G-220
    • experimental_annotation
      • automated-name-match
  • RXN1G-320
    • experimental_annotation
      • automated-name-match
  • RXN1G-363
    • experimental_annotation
      • automated-name-match
  • RXN1G-517
    • experimental_annotation
      • automated-name-match

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-3542&oldid=29279"