Difference between revisions of "PWY-5254"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** methionyl-trna_formyltransferase
+
** palmitate biosynthesis II (bacteria and plants)
−
** ribosomal_rna_small_subunit_methyltransferase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** palmitic acid biosynthesis
 +
** de novo lipogenesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''31''' reactions found over '''31''' reactions in the full pathway
−
** 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c] '''+''' 1 [[THF-GLU-N]][c]
+
* [[3.1.2.21-RXN]]
−
* With common name(s):
+
** 0 associated gene:
−
** 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 an L-methionyl-[initiator tRNAmet][c] '''=>''' 1 H+[c] '''+''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c] '''+''' 1 a tetrahydrofolate[c]
+
** 1 reconstruction source(s) associated:
−
 
+
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
== Genes associated with this reaction  ==
+
* [[4.2.1.58-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 6 associated gene(s):
−
* [[Tiso_gene_13560]]
+
*** [[Tiso_gene_13394]]
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_6884]]
−
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_136]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[Tiso_gene_10876]]
−
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_500]]
−
* [[Tiso_gene_13561]]
+
*** [[Tiso_gene_135]]
−
** IN-SILICO_ANNOTATION
+
** 3 reconstruction source(s) associated:
−
***AUTOMATED-NAME-MATCH
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[manual-primary_network]]
−
* [[Tiso_gene_9355]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
* [[4.2.1.59-RXN]]
−
***EC-NUMBER
+
** 7 associated gene(s):
−
== Pathways  ==
+
*** [[Tiso_gene_136]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_135]]
−
* Category: [[orthology]]
+
*** [[Tiso_gene_500]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[Tiso_gene_6885]]
−
*** Tool: [[pantograph]]
+
*** [[Tiso_gene_6884]]
−
* Category: [[annotation]]
+
*** [[Tiso_gene_10876]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[Tiso_gene_13394]]
−
*** Tool: [[pathwaytools]]
+
** 4 reconstruction source(s) associated:
−
** Source: [[annotation-experimental_annotation]]
+
*** [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-synechocystis]]
 +
* [[4.2.1.61-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_10876]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-16393]]
 +
** 9 associated gene(s):
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_348]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_9394]]
 +
*** [[Tiso_gene_4191]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_7855]]
 +
*** [[Tiso_gene_10876]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9514]]
 +
** 10 associated gene(s):
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_16579]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_10415]]
 +
*** [[Tiso_gene_624]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9516]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_19302]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9518]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13083]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9520]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_136]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9523]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_14485]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9524]]
 +
** 10 associated gene(s):
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_624]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_10415]]
 +
*** [[Tiso_gene_16579]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_13394]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9527]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_14485]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9528]]
 +
** 10 associated gene(s):
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_624]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_16579]]
 +
*** [[Tiso_gene_10415]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_9885]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9531]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_5939]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9532]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9533]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_6884]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9535]]
 +
** 9 associated gene(s):
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_15991]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_136]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9536]]
 +
** 10 associated gene(s):
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_10415]]
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_624]]
 +
*** [[Tiso_gene_16579]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9537]]
 +
** 9 associated gene(s):
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_6884]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_9421]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_6885]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_6671]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-synechocystis]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[RXN-9539]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_5939]]
 +
*** [[Tiso_gene_14485]]
 +
*** [[Tiso_gene_19302]]
 +
*** [[Tiso_gene_15991]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-9540]]
 +
** 7 associated gene(s):
 +
*** [[Tiso_gene_9885]]
 +
*** [[Tiso_gene_13083]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_500]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9549]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
 +
* [[RXN-9623]]
 +
** 10 associated gene(s):
 +
*** [[Tiso_gene_9394]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_12275]]
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_7855]]
 +
*** [[Tiso_gene_348]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_4191]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9655]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_10876]]
 +
*** [[Tiso_gene_136]]
 +
*** [[Tiso_gene_500]]
 +
*** [[Tiso_gene_13394]]
 +
*** [[Tiso_gene_135]]
 +
*** [[Tiso_gene_6884]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RXN-9657]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9658]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9659]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9660]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9661]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9662]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-9663]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_10778]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* ECOCYC:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-33090}}
−
** [http://www.uniprot.org/uniprot/P94463 P94463]
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
+
{{#set: common name=palmitate biosynthesis II (bacteria and plants)}}
−
** [http://www.uniprot.org/uniprot/P50932 P50932]
+
{{#set: common name=palmitic acid biosynthesis|de novo lipogenesis}}
−
** [http://www.uniprot.org/uniprot/P47605 P47605]
+
{{#set: reaction found=31}}
−
** [http://www.uniprot.org/uniprot/P44787 P44787]
+
{{#set: total reaction=31}}
−
** [http://www.uniprot.org/uniprot/P56461 P56461]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
+
−
** [http://www.uniprot.org/uniprot/O51091 O51091]
+
−
** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
+
−
** [http://www.uniprot.org/uniprot/P23882 P23882]
+
−
** [http://www.uniprot.org/uniprot/P32785 P32785]
+
−
** [http://www.uniprot.org/uniprot/P75235 P75235]
+
−
** [http://www.uniprot.org/uniprot/Q55163 Q55163]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=methionyl-trna_formyltransferase}}
+
−
{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
+
−
{{#set: ec number=EC-2.1.2.9}}
+
−
{{#set: gene associated=Tiso_gene_13560|Tiso_gene_13561|Tiso_gene_9355}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:11, 21 March 2018

Pathway PWY-5971

  • taxonomic range:
  • common name:
    • palmitate biosynthesis II (bacteria and plants)
  • Synonym(s):
    • palmitic acid biosynthesis
    • de novo lipogenesis

Reaction(s) found

31 reactions found over 31 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5254&oldid=32806"