Difference between revisions of "Tiso gene 10876"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLATECYC-RXN ADENYLATECYC-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** adenylate_cyc...")
(Created page with "Category:Gene == Gene Tiso_gene_10876 == * right end position: ** 8106 * transcription direction: ** POSITIVE * left end position: ** 3188 * centisome position: ** 38.7410...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYLATECYC-RXN ADENYLATECYC-RXN] ==
+
== Gene Tiso_gene_10876 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 8106
−
* common name:
+
* transcription direction:
−
** adenylate_cyclase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/4.6.1.1 EC-4.6.1.1]
+
** 3188
 +
* centisome position:
 +
** 38.741035   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[2.3.1.165-RXN]]
−
** 1 [[ATP]][c] '''=>''' 1 [[CAMP]][c] '''+''' 1 [[PPI]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 ATP[c] '''=>''' 1 cyclic-AMP[c] '''+''' 1 diphosphate[c]
+
* Reaction: [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[3-OXOACYL-ACP-REDUCT-RXN]]
−
* [[Tiso_gene_10495]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: ec-number
−
* [[Tiso_gene_17342]]
+
* Reaction: [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: ec-number
−
* [[Tiso_gene_13108]]
+
* Reaction: [[3-OXOACYL-ACP-SYNTH-RXN]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15744]]
+
*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[4.2.1.58-RXN]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_9251]]
+
*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[4.2.1.59-RXN]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_8950]]
+
*** Assignment: ec-number
−
** [[pantograph]]-[[creinhardtii]]
+
* Reaction: [[4.2.1.61-RXN]]
−
* [[Tiso_gene_16542]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[ACP-S-ACETYLTRANSFER-RXN]]
−
* [[Tiso_gene_10744]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[ACYLCOASYN-RXN]]
−
* [[Tiso_gene_16294]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[ENOYL-ACP-REDUCT-NADPH-RXN]]
−
* [[Tiso_gene_6404]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[FATTY-ACYL-COA-SYNTHASE-RXN]]
−
* [[Tiso_gene_9865]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[LINOLENOYL-RXN]]
−
* [[Tiso_gene_14301]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[MALONYL-COA-ACP-TRANSACYL-RXN]]
−
* [[Tiso_gene_6871]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
−
* [[Tiso_gene_16074]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***AUTOMATED-NAME-MATCH
+
* Reaction: [[R223-RXN]]
−
* [[Tiso_gene_34]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: ec-number
−
* [[Tiso_gene_5483]]
+
* Reaction: [[RXN-12184]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: ec-number
−
* [[Tiso_gene_1107]]
+
* Reaction: [[RXN-12560]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: ec-number
−
* [[Tiso_gene_16143]]
+
* Reaction: [[RXN-12978]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
== Pathways  ==
+
*** Assignment: ec-number
−
== Reconstruction information  ==
+
* Reaction: [[RXN-13008]]
−
* Category: [[orthology]]
+
** Source: [[annotation-in-silico_annotation]]
−
** Source: [[orthology-creinhardtii]]
+
*** Assignment: ec-number
−
*** Tool: [[pantograph]]
+
* Reaction: [[RXN-13279]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Assignment: ec-number
−
* Category: [[annotation]]
+
* Reaction: [[RXN-13290]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-13614]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16380]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16389]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16393]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16401]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16402]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16415]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16418]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-5901]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-7904]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9514]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9515]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9518]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9520]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9521]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9524]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9526]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9528]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9530]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9532]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9533]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9534]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9535]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9536]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9537]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9538]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9540]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9542]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9623]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9633]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9634]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9644]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9648]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9650]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9651]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9652]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9653]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9654]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9655]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9673]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7238]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7239]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-7248]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN3O-1803]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN3O-5293]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN3O-5304]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-469]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-477]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-480]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN66-484]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[TRANS-RXN0-623]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-6920]]
 +
* [[PWY-7664]]
 +
* [[P221-PWY]]
 +
* [[PWY-7388]]
 +
* [[PWY-321]]
 +
* [[PWY-5972]]
 +
* [[PWY-5970]]
 +
* [[PWY-5971]]
 +
* [[PWY-7033]]
 +
* [[PWY-5676]]
 +
* [[PWY-5136]]
 +
* [[PWY66-389]]
 +
* [[PWY-7288]]
 +
* [[PWY-4381]]
 +
* [[PWY-7490]]
 +
* [[PWY-6733]]
 +
* [[PWY-7094]]
 +
* [[PWY66-391]]
 +
* [[PWY0-862]]
 +
* [[PWY-5994]]
 +
* [[PWY3O-355]]
 +
* [[FAO-PWY]]
 +
* [[PWY-1121]]
 +
* [[PWY-6873]]
 +
* [[PWY-5965]]
 +
* [[PWY-5966]]
 +
* [[PWY-5143]]
 +
* [[FASYN-INITIAL-PWY]]
 +
* [[PWY-5885]]
 +
* [[PWY-7724]]
 +
* [[PWY-5741]]
 +
* [[FASYN-ELONG-PWY]]
 +
* [[PWY-6001]]
 +
* [[PWY-7216]]
 +
* [[PWY-5147]]
 +
* [[PWY-7049]]
 +
* [[PWY-6799]]
 +
* [[PWY-6000]]
 +
* [[PWY66-387]]
 +
* [[PWY-5989]]
 +
* [[PWY1-3]]
 +
* [[PWY-6803]]
 +
* [[PWY66-388]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=8106}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15389 15389]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=3188}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00089 R00089]
+
{{#set: centisome position=38.741035    }}
−
* UNIPROT:
+
{{#set: reaction associated=2.3.1.165-RXN|3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|3-OXOACYL-ACP-REDUCT-RXN|3-OXOACYL-ACP-SYNTH-BASE-RXN|3-OXOACYL-ACP-SYNTH-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|ACP-S-ACETYLTRANSFER-RXN|ACYLCOASYN-RXN|ENOYL-ACP-REDUCT-NADPH-RXN|FATTY-ACYL-COA-SYNTHASE-RXN|LINOLENOYL-RXN|MALONYL-COA-ACP-TRANSACYL-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|R223-RXN|RXN-12184|RXN-12560|RXN-12978|RXN-13008|RXN-13279|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-5901|RXN-7904|RXN-9514|RXN-9515|RXN-9518|RXN-9520|RXN-9521|RXN-9524|RXN-9526|RXN-9528|RXN-9530|RXN-9532|RXN-9533|RXN-9534|RXN-9535|RXN-9536|RXN-9537|RXN-9538|RXN-9540|RXN-9542|RXN-9623|RXN-9633|RXN-9634|RXN-9644|RXN-9648|RXN-9650|RXN-9651|RXN-9652|RXN-9653|RXN-9654|RXN-9655|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN3O-1803|RXN3O-5293|RXN3O-5304|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
−
** [http://www.uniprot.org/uniprot/P14605 P14605]
+
{{#set: pathway associated=PWY-6920|PWY-7664|P221-PWY|PWY-7388|PWY-321|PWY-5972|PWY-5970|PWY-5971|PWY-7033|PWY-5676|PWY-5136|PWY66-389|PWY-7288|PWY-4381|PWY-7490|PWY-6733|PWY-7094|PWY66-391|PWY0-862|PWY-5994|PWY3O-355|FAO-PWY|PWY-1121|PWY-6873|PWY-5965|PWY-5966|PWY-5143|FASYN-INITIAL-PWY|PWY-5885|PWY-7724|PWY-5741|FASYN-ELONG-PWY|PWY-6001|PWY-7216|PWY-5147|PWY-7049|PWY-6799|PWY-6000|PWY66-387|PWY-5989|PWY1-3|PWY-6803|PWY66-388}}
−
** [http://www.uniprot.org/uniprot/Q05766 Q05766]
+
−
** [http://www.uniprot.org/uniprot/P21932 P21932]
+
−
** [http://www.uniprot.org/uniprot/P19754 P19754]
+
−
** [http://www.uniprot.org/uniprot/P26769 P26769]
+
−
** [http://www.uniprot.org/uniprot/P26770 P26770]
+
−
** [http://www.uniprot.org/uniprot/Q03343 Q03343]
+
−
** [http://www.uniprot.org/uniprot/Q01341 Q01341]
+
−
** [http://www.uniprot.org/uniprot/P40134 P40134]
+
−
** [http://www.uniprot.org/uniprot/P40146 P40146]
+
−
** [http://www.uniprot.org/uniprot/P51829 P51829]
+
−
** [http://www.uniprot.org/uniprot/P49606 P49606]
+
−
** [http://www.uniprot.org/uniprot/P0A1A7 P0A1A7]
+
−
** [http://www.uniprot.org/uniprot/P19485 P19485]
+
−
** [http://www.uniprot.org/uniprot/Q03100 Q03100]
+
−
** [http://www.uniprot.org/uniprot/P32870 P32870]
+
−
** [http://www.uniprot.org/uniprot/Q08462 Q08462]
+
−
** [http://www.uniprot.org/uniprot/P43524 P43524]
+
−
** [http://www.uniprot.org/uniprot/Q44561 Q44561]
+
−
** [http://www.uniprot.org/uniprot/P51830 P51830]
+
−
** [http://www.uniprot.org/uniprot/Q01513 Q01513]
+
−
** [http://www.uniprot.org/uniprot/P40136 P40136]
+
−
** [http://www.uniprot.org/uniprot/P15318 P15318]
+
−
** [http://www.uniprot.org/uniprot/P08678 P08678]
+
−
** [http://www.uniprot.org/uniprot/P23466 P23466]
+
−
** [http://www.uniprot.org/uniprot/P00936 P00936]
+
−
** [http://www.uniprot.org/uniprot/P27580 P27580]
+
−
** [http://www.uniprot.org/uniprot/P40145 P40145]
+
−
** [http://www.uniprot.org/uniprot/P26338 P26338]
+
−
** [http://www.uniprot.org/uniprot/P40130 P40130]
+
−
** [http://www.uniprot.org/uniprot/P30528 P30528]
+
−
** [http://www.uniprot.org/uniprot/Q9QW33 Q9QW33]
+
−
** [http://www.uniprot.org/uniprot/P72951 P72951]
+
−
** [http://www.uniprot.org/uniprot/P40138 P40138]
+
−
** [http://www.uniprot.org/uniprot/Q9VW60 Q9VW60]
+
−
** [http://www.uniprot.org/uniprot/O96306 O96306]
+
−
** [http://www.uniprot.org/uniprot/Q9Z286 Q9Z286]
+
−
** [http://www.uniprot.org/uniprot/O76229 O76229]
+
−
** [http://www.uniprot.org/uniprot/O77079 O77079]
+
−
** [http://www.uniprot.org/uniprot/O96762 O96762]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=adenylate_cyclase}}
+
−
{{#set: ec number=EC-4.6.1.1}}
+
−
{{#set: gene associated=Tiso_gene_10495|Tiso_gene_17342|Tiso_gene_13108|Tiso_gene_15744|Tiso_gene_9251|Tiso_gene_8950|Tiso_gene_16542|Tiso_gene_10744|Tiso_gene_16294|Tiso_gene_6404|Tiso_gene_9865|Tiso_gene_14301|Tiso_gene_6871|Tiso_gene_16074|Tiso_gene_34|Tiso_gene_5483|Tiso_gene_1107|Tiso_gene_16143}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:08, 21 March 2018

Gene Tiso_gene_10876

  • right end position:
    • 8106
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3188
  • centisome position:
    • 38.741035
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10876&oldid=46210"